CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069466_ssr48 microsatellite CX069466_ssr48:48..59. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:119..991. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_LEMMI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lemna minor GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.674e-60
Identity = 119/159 (74.84%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHD                   FTNPIYSAFSLGLVL+C+SLFYIL NS+FVAAAQLLIYVGA+NVLI+FAVMFM GS+YS D  LNLWT+GDG+TSLVCTSI F LI+TI DTSWYGIIWTT+AN IIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLTGPIHDILVVFLGLVLILGGLGVVLFTNPIYSAFSLGLVLICVSLFYILLNSYFVAAAQLLIYVGAINVLILFAVMFMKGSEYSND--LNLWTVGDGVTSLVCTSILFLLISTISDTSWYGIIWTTKANHIIEQDLISNVQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CALFG (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhG PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.674e-60
Identity = 119/159 (74.84%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLVLVCISLF+I SNS+FVAAAQLLIYVGAVNVLI+FAVMFMNGS+YS DF  +LWT+GDG+TSLVCTSI FSLITTI +TSWYGIIWTTR+NQIIEQDL SN QQIGI L+TDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGLGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSNDF--HLWTVGDGVTSLVCTSILFSLITTIWNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIRLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Atropa belladonna GN=ndhG PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.186e-60
Identity = 118/159 (74.21%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum tuberosum GN=ndhG PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.855e-60
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVL+C SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLICTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Crucihimalaya wallichii GN=ndhG PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.855e-60
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMN S+YS DF  NLWT+G+G+TSLVCT+I   L++TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLVGGLGVVLLPNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNDSEYSTDF--NLWTVGNGITSLVCTTILCLLMSTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium barbadense GN=ndhG PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.729e-60
Identity = 118/159 (74.21%), Postives = 127/159 (79.87%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                     NPIYSAFSLGLVLVCISLFYIL+N HFVA A+LLIYVGA+NVLI+F VMFMN S+Y KDF  N WTIG+GLTSLVCTSI  SLI+TILDTSWYGIIWTTR+NQIIEQDLI NSQQIGIHL+TDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGGLGVVLRINPIYSAFSLGLVLVCISLFYILTNYHFVATAKLLIYVGAINVLILFVVMFMNSSEYYKDF--NPWTIGNGLTSLVCTSILVSLISTILDTSWYGIIWTTRSNQIIEQDLIGNSQQIGIHLATDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum lycopersicum GN=ndhG PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.870e-60
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSN++FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+GDG+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGDGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_COFAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Coffea arabica GN=ndhG PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.870e-60
Identity = 116/159 (72.96%), Postives = 129/159 (81.13%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+LPGPIHD                     NPIYSAFSLG VLVCISLFYIL NS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWTIGDG+TS+VCT +F SLITTI D SWYGIIWTT++NQI+EQDLI+NSQQIG+HLSTDFFLPFE
Sbjct:    1 MNLPGPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGFVLVCISLFYILLNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTIGDGVTSVVCTGLFISLITTIPDMSWYGIIWTTKSNQILEQDLITNSQQIGVHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SPIOL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Spinacia oleracea GN=ndhG PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.360e-60
Identity = 116/159 (72.96%), Postives = 132/159 (83.02%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FTNPI+SAFSLGLVLVCISLFYIL+NSHFVA+AQLLIYVGA+NVLIIF+VMFM+G +Y K FQL  WT+GDG+TSLVC S+F SLI+TIL+TSWYGIIWTT++NQI+EQDLI+ SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGALGVVLFTNPIFSAFSLGLVLVCISLFYILANSHFVASAQLLIYVGAINVLIIFSVMFMSGPEYDKKFQL--WTVGDGVTSLVCISLFVSLISTILNTSWYGIIWTTKSNQILEQDLINASQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum bulbocastanum GN=ndhG PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.307e-60
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL  PIHD                     NPIYSAFSLGLVLVC SLFYILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  +LWT+G+G+TS+VC S+F SLITTI DTSWYGIIWTTR+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--HLWTVGNGITSMVCISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_LEMMI1.674e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CALFG1.674e-6074.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ATRBE2.186e-6074.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLTU2.855e-6073.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CRUWA2.855e-6073.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSBA3.729e-6074.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLLC4.870e-6073.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_COFAR4.870e-6072.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SPIOL6.360e-6072.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLBU8.307e-6073.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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