DR403857

Overview
NameDR403857
Unique NameDR403857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 60/141 (42.55%), Postives = 96/141 (68.09%), Query Frame = 3
Query:   15 VHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFD----VNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 425
            V++YLK +C DL + +G +D  S+ P    +T+G FK+G  +GH V+P    ++L++L R++D DIL+ G TH+F AY+ +G   +NPGSATGA +    +    + PSFVLMD+ G  +++YVY + DGEV+V+K+ ++K
Sbjct:   45 VYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEKMQYRK 185          
BLAST of DR403857 vs. ExPASy Swiss-Prot
Match: PEP11_YEAST (Vacuolar protein sorting-associated protein 29 OS=Saccharomyces cerevisiae GN=VPS29 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.288e-12
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 3
Query:   18 HDYLK---SLCPDLHVTRGEYD-------------EDSR----YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSS---FTFDVNPS 329
            +D+LK    +  ++ + RGE+D             ++SR     P    +  G  K+G C G+ V+P  D  SL  L RQLDVDIL+ G TH  +AY  EG   +NPGS TGA+++     FDV  S
Sbjct:   45 YDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTDWPIVFDVEDS 171          
The following BLAST results are available for this feature:
BLAST of DR403857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_SCHPO1.515e-2942.55Vacuolar protein sorting-associated protein 29 OS=... [more]
PEP11_YEAST1.288e-1237.01Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403857 ID=DR403857; Name=DR403857; organism=Citrus sinensis; type=EST; length=638bp
GGGCTATCGAAGAAGTCCATGATTATTTGAAGAGTCTTTGTCCTGATTTG
CATGTCACTCGAGGTGAATATGATGAAGATTCACGTTATCCCGAAACTAA
GACACTCACCATTGGGCAATTCAAGCTTGGAATCTGCCATGGTCATCAGG
TTATTCCATGGGGGGACTTGGATTCGCTGGCAATGCTGCAAAGGCAGTTG
GATGTGGACATCCTTGTGACTGGTCATACCCATCAGTTCAAAGCCTACAA
ACATGAAGGTGGTGTTGTTATAAATCCTGGCTCTGCAACTGGTGCCTACA
GTAGCTTTACATTTGATGTAAACCCAAGCTTTGTACTCATGGACATTGAT
GGTCTGCGAGTTGTGGTTTATGTATACGAATTAATTGACGGTGAAGTAAA
GGTTGACAAAATTGATTTTAAGAAGACTGCCACTACTCGATTAGCACACT
GATTCAGCACACTGCATCCTTGACTTTGTTGGACTAATTGCTGAGAACTT
TTATGTAATGCCAATAAGTTGTTCATGTGTAAATTCTCTTTAACAGTTTT
GCTTGGATTCTGGAGATCATGTATTGAAACGAATAAATCGAATATTTACT
NNGGCTCATTCCTAGAAAAAAAAAAAAAAAAAAAAAAA
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