DR403842

Overview
NameDR403842
Unique NameDR403842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_DRIGR (Photosystem II reaction center protein K OS=Drimys granadensis GN=psbK PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.766e-18
Identity = 45/61 (73.77%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL+ ICLNSA +SSSF FAKLPEAYAF NPIVD MPVIP         WQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALHSSSFFFAKLPEAYAFFNPIVDFMPVIPVLFFLLALVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SOLTU (Photosystem II reaction center protein K OS=Solanum tuberosum GN=psbK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  YSSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SOLLC (Photosystem II reaction center protein K OS=Solanum lycopersicum GN=psbK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  YSSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SOLBU (Photosystem II reaction center protein K OS=Solanum bulbocastanum GN=psbK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  YSSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIF L+ ICLNS  YSSSF FAKLPEAYAF NPI+DVMP+IP         WQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_ATRBE (Photosystem II reaction center protein K OS=Atropa belladonna GN=psbK PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  YSSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SINAL (Photosystem II reaction center protein K OS=Sinapis alba GN=psbK PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.176e-17
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIF+L+ IC NSA +SS+FL AKLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_TOBAC (Photosystem II reaction center protein K OS=Nicotiana tabacum GN=psbK PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  +SSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_POPAL (Photosystem II reaction center protein K OS=Populus alba GN=psbK PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNI +L+ ICLN A YSSSF F KLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNILNLICICLNFALYSSSFFFTKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_NICTO (Photosystem II reaction center protein K OS=Nicotiana tomentosiformis GN=psbK PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 43/61 (70.49%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLN FSL+ ICLNS  +SSSF F KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of DR403842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
PSBK_DRIGR9.766e-1873.77Photosystem II reaction center protein K OS=Drimys... [more]
PSBK_SOLTU1.275e-1772.13Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLLC1.275e-1772.13Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_SOLBU1.275e-1772.13Photosystem II reaction center protein K OS=Solanu... [more]
PSBK_PHAAO1.275e-1770.49Photosystem II reaction center protein K OS=Phalae... [more]
PSBK_ATRBE1.275e-1772.13Photosystem II reaction center protein K OS=Atropa... [more]
PSBK_SINAL2.176e-1772.13Photosystem II reaction center protein K OS=Sinapi... [more]
PSBK_TOBAC3.711e-1770.49Photosystem II reaction center protein K OS=Nicoti... [more]
PSBK_POPAL3.711e-1772.13Photosystem II reaction center protein K OS=Populu... [more]
PSBK_NICTO3.711e-1770.49Photosystem II reaction center protein K OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403842 ID=DR403842; Name=DR403842; organism=Citrus sinensis; type=EST; length=445bp
GCCGGGGGAAAAAAAAAAAAAAAAAAAGTANNNNTNNNNCAATTCTCACA
CGAGAATAGAAGGATTTTTGTTTTGATTGGGTCGGTTCCAAGAAGTTTTT
TTTTGTCTACCTTACTTTCTTTTCTTCATTTTTATCTTATATCAATAAGA
TATTAATAACTCAATCAAAATAAAATTATCTCCAAGAACAAAATGTTTGT
TATGCTTAATATCTTTAGTTTAATGTATATCTGTCTTAATTCTGCCCCTT
ATTCGAGTAGTTTTTTATTCGCTAAATTACCCGAGGCCTACGCTTTTTTG
AATCCAATTGTAGATGTTATGCCAGTAATACCTGTTCTATTTTTTCTCTT
AGTCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAGATCTTTAATATT
GTGCTAGAAAAATTCATGATTTATTCTAGTTCGAAAAAAAAAAAA
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