CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.811e-36
Identity = 94/246 (38.21%), Postives = 137/246 (55.69%), Query Frame = -1
Query:  305 AILRLDLAGRDLTDALMKILTERG------YSF-------------------TTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI----GMES--------AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 907
            A++   L G  LTD L+K L  +G      YSF                   TT +     +R IV D+K+ +  +    +   +    S+    SYELPDGQ + IGA+RF+ P+V+F PS++    GME          G+      SI KCDVDIR++LY +I+L+GG++    + +R+ K++   +P S ++KV+A     ER++SVWIGGSILASL +FQQMW +KSEY+E G S + RKC
Sbjct:  198 AVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVP---DTPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKC 440          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.874e-33
Identity = 89/239 (37.24%), Postives = 127/239 (53.14%), Query Frame = -1
Query:  305 LAGRDLTDALMKILTERG------YSFT-----------------TTAE-------REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI-----------GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 889
            + G  LTD +MK L  +G      YSF                   T E       R I  D+KE +  +      E+  A   +    SYELPDGQ I +GA+RF+ P++LF PS+             M   G+     +S+ +CDVDIRK+L  +I+LSGGS+    + +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW +K+EY+E G S + RKC
Sbjct:  207 IGGEFLTDCMMKSLESKGVVIRPRYSFKKKEVGPGEYKVVDLDLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTT---SYELPDGQTIEVGADRFKIPDILFNPSLSQTIPGVDGFADSMSVRGLPRMVIDSVNRCDVDIRKELLSSILLSGGSSSILQLKERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.874e-33
Identity = 89/239 (37.24%), Postives = 127/239 (53.14%), Query Frame = -1
Query:  305 LAGRDLTDALMKILTERG------YSFT-----------------TTAE-------REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI-----------GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 889
            + G  LTD +MK L  +G      YSF                   T E       R I  D+KE +  +      E+  A   +    SYELPDGQ I +GA+RF+ P++LF PS+             M   G+     +S+ +CDVDIRK+L  +I+LSGGS+    + +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW +K+EY+E G S + RKC
Sbjct:  207 IGGEFLTDCMMKSLESKGVVIRPRYSFKKKEVGPGEYKVVDLDLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTT---SYELPDGQTIEVGADRFKIPDILFNPSLSQTIPGVDGFADSMSVRGLPRMVIDSVNRCDVDIRKELLSSILLSGGSSSILQLKERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33
Identity = 75/175 (42.86%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  305 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 808
            E+++D +  +  ++ D   + + A     V   YE+P+G     GAER R PE LF PS +    G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E+S   P SM++K++A     ERK+S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  254 EVIQDFQASVLQVS-DSPYDEQVAAQMPTVH--YEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33
Identity = 75/175 (42.86%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  305 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 808
            E+++D +  +  ++ D   + + A     V   YE+P+G     GAER R PE LF PS +    G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E+S   P SM++K++A     ERK+S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  254 EVIQDFQASVLQVS-DSPYDEQVAAQMPTVH--YEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33
Identity = 75/175 (42.86%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  305 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 808
            E+++D +  +  ++ D   + + A     V   YE+P+G     GAER R PE LF PS +    G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E+S   P SM++K++A     ERK+S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  254 EVIQDFQASVLQVS-DSPYDEQVAAQMPTVH--YEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33
Identity = 75/175 (42.86%), Postives = 107/175 (61.14%), Query Frame = -1
Query:  305 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 808
            E+++D +  +  ++ D   + + A     V   YE+P+G     GAER R PE LF PS +    G    G+      SI  CD+DIR  LYG+++++GG+T+  G  DR+++E+S   P SM++K++A     ERK+S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  254 EVIQDFQASVLQVS-DSPYDEQVAAQMPTVH--YEMPNGYNTDYGAERLRIPEGLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.299e-33
Identity = 75/204 (36.76%), Postives = 114/204 (55.88%), Query Frame = -1
Query:  305 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQP-SMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 913
            P  I R+DLAG  LT  L + +    ++     + + + ++K++  Y+ALD+++E    +      +  +LPDGQ+IT+G E F+CPE+LF P    G  S G+     +S+     ++R D+  N++L GGS++F G   R   E+         + VVA   R  SVWIGGSILASL  FQ  W+ + +Y+E GP IV RKC
Sbjct:  210 PSGIQRMDLAGHYLTKFLAEKILRSSFA-VKKEDMDTMENIKQQYCYVALDFQKE--QGRPDEKFRRCLKLPDGQMITVGKELFQCPELLFHPPDTSGPSSLGLPSMVEHSLSTVPQELRADMEQNVLLCGGSSLFTGFEGRFKTELLRRLGPEAHVVVVAQANRNLSVWIGGSILASLCAFQTRWVLREQYEEHGPDIVLRKC 410          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = -1
Query:  305 YELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 709
            YE P+G     GAER + PE LF PS +    G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E+S   P SM++K++A     ER++S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  287 YEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = -1
Query:  305 YELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 709
            YE P+G     GAER + PE LF PS +    G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E+S   P SM++K++A     ER++S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  287 YEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP4_ARATH1.811e-3638.21Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ARP4_ORYSJ1.874e-3337.24Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI1.874e-3337.24Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ACL6B_RAT2.447e-3342.86Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE2.447e-3342.86Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN2.447e-3342.86Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN2.447e-3342.86Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACTL9_RAT9.299e-3336.76Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ACL6A_MOUSE1.754e-3146.48Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACL6A_MACFA1.754e-3146.48Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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