CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.878e-25
Identity = 77/255 (30.20%), Postives = 115/255 (45.10%), Query Frame = -1
Query:  302 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS---AVEKSYELPDGQVITIGA-------------------------------------------------ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 910
            +A+ R+DL G+ LT+ L ++++ R  S     E  ++ D KEKL +++LD   +L  A+ SS       SY LPDG     G                                                  ERF  PE+LF P  +GM  AG+ E    +I  C   ++  L+  I+L+GGST+FP   +R+ KE+  L P   ++K++A  +     W GGS+LA    F+ M I KSEY+E G     R+ F
Sbjct:  176 YAVRRMDLGGKALTNYLKELISYR--SLNVMDETLLIDDAKEKLCFVSLDVPGDLRLARLSSNDNPFRCSYILPDGITYKKGFVKDLDEACRYSSLPANGESVRKDSSDSDRSKFEDKKKPELSQNEFVLTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFF 428          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.878e-25
Identity = 77/255 (30.20%), Postives = 115/255 (45.10%), Query Frame = -1
Query:  302 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS---AVEKSYELPDGQVITIGA-------------------------------------------------ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 910
            +A+ R+DL G+ LT+ L ++++ R  S     E  ++ D KEKL +++LD   +L  A+ SS       SY LPDG     G                                                  ERF  PE+LF P  +GM  AG+ E    +I  C   ++  L+  I+L+GGST+FP   +R+ KE+  L P   ++K++A  +     W GGS+LA    F+ M I KSEY+E G     R+ F
Sbjct:  176 YAVRRMDLGGKALTNYLKELISYR--SLNVMDETLLIDDAKEKLCFVSLDVPGDLRLARLSSNDNPFRCSYILPDGITYKKGFVKDLDEACRYSSLPANGESVRKDSSDSDRSKFEDKKKPELSQNEFVLTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFF 428          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.453e-25
Identity = 72/220 (32.73%), Postives = 112/220 (50.91%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQV--------ITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T  +  +L +R ++       E+ + +KEK  Y+  D  +E     T +A  K     DG          + +G ERF  PE+ F P     E +  I +T    I +C +D+R+ LY NIVLSGGSTMF   A ++ +++  L+                P  + ++V++   ++Y+VW GGS+LAS S F Q+   K+EY E GPSI
Sbjct:  197 IKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFVKYDTDAA--KWLRTYDGINSITKKPFNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 65/227 (28.63%), Postives = 114/227 (50.22%), Query Frame = -1
Query:  308 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS---SAVEKSYELPD------------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 907
            AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + Y++ D+ ++++ AK     + V   Y LPD                         Q++ +  ERF  PE+LF PS IG++  GI E    SI     +++   + NIVL+GG+++FPG  DR+  E+  L P+   + VV P       W GG +++    F+ M + + +Y+E+G S+   K
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEK 393          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 66/227 (29.07%), Postives = 114/227 (50.22%), Query Frame = -1
Query:  308 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS---SAVEKSYELPD------------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 907
            AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + Y++ D+ +++E AK     + V   Y LPD                         Q++ +  ERF  PE+LF PS IG++  GI E   +SI     +++   + NIVL+GG+T+FPG  DR+  E+  L P+   + VV P       W GG +++    F+ + + + +Y+E G +I   K
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYVSQDFYKDMEIAKLKGEENTVMVDYVLPDFSTIKKGFCKPREEMVLSGKYKTGEQILRLTNERFAVPEILFHPSDIGIQEMGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEK 393          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.076e-24
Identity = 64/227 (28.19%), Postives = 114/227 (50.22%), Query Frame = -1
Query:  308 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS---SAVEKSYELPD------------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 907
            AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + Y++ D+ ++++ AK     + V   Y LPD                         Q++ +  ERF  PE+LF PS IG++  GI E    SI     +++   + NIVL+GG+++FPG  +R+  E+  L P+   + VV P       W GG +++    F+ M + + +Y+E+G S+   K
Sbjct:  169 AIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEDNTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVLPENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEK 393          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.031e-23
Identity = 62/211 (29.38%), Postives = 107/211 (50.71%), Query Frame = -1
Query:  329 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDG-------------------QVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 904
            I R+++ G+ +T+ L + ++ R Y+     E  I+  +KEK+ +++ D++++L+ AK + +++  Y LPD                    Q + +G ERF  PE+LF PS+I ++ +G+ ET   SI     + R  L  NIV+ GG    PG   R+ K++  L PS   +K     +  ++   GG +L     F  + + K EYDE G
Sbjct:  159 IRRVNVGGKTMTNLLKETVSFRHYNMMD--ETYIINRVKEKVCFVSQDFDKDLDLAKKTKSLQVEYALPDYKTTKLGYVVDRKQHDISELQTLKLGNERFTMPEILFDPSIIDLQQSGLCETIAESIQASPKEFRSLLCSNIVIVGGCAKLPGFQSRLEKDLRPLIPSEYHMKTRLDDKPDFTTLQGGKVLVDQPGFSNLCVTKQEYDEYG 367          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.998e-23
Identity = 67/221 (30.32%), Postives = 109/221 (49.32%), Query Frame = -1
Query:  320 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA--------KTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMES-AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMK----------------IKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 907
            +I  + LAGRD+T+ ++++L ER          E+ + +KE  +Y+  D  +E +          KT   +E   + P    + +G ERF  PE+ F P +   +    + +    +I  C +D R+ LY NIVLSGGSTMF     R+ ++I       +K                +KV++   ++++VW GGS+LAS   F ++   K +YDE GPSI
Sbjct:  197 SIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFKKYDTEPDKWFKTYEGIESVGKKPYN--VDVGYERFLGPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGSTMFKDFGKRLQRDIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRFAVWFGGSMLASTPEFYKVCHTKQQYDEVGPSI 415          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.680e-23
Identity = 68/219 (31.05%), Postives = 115/219 (52.51%), Query Frame = -1
Query:  317 AILRLDLAGRDLTDALMKILTERGYSFTT--TAEREIVRDMKEKLAYIALDYEQEL-----ETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYN-SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIV 907
            AI  + +AGRD+T  +  +L ERG + T+  TAE+     +K++  Y+  D  +E      + +K +  V ++ E    +V+ IG ERF  PE+ F P +   +      T  + +I  C +D+RK LY NIVLSGGSTMF     R+ +++ ++                + + + V++  +++ +VW GGS+LA  + F+     K +Y+E GP IV
Sbjct:  227 AIKNIPIAGRDITLFIQSLLRERGEADTSLRTAEK-----IKQEYCYVCPDIVKEFNKFDKDPSKFAQFVVENQEKTRRKVVDIGYERFLAPEIFFNPEIASSDFLTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNRIAQSELLSGTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAEFKGYCHTKKDYEEYGPEIV 440          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 69/220 (31.36%), Postives = 103/220 (46.82%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS--------SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI----------------SALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGR++T  +  +L ER          E  + +KEK  YI  D  +E     T         S V    + P    + +G ERF  PE+ F P     + +  + E   N I  C +D+R+ LY NIVLSGGSTMF     R+ ++I                  + P  + ++V+    ++Y+VW GGS+LAS   F Q+   K+ Y+E GPSI
Sbjct:  190 IKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPGKWIRNFSGVNTVTKAPFN--VDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAYEEYGPSI 407          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP6_ORYSJ1.878e-2530.20Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI1.878e-2530.20Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP3_CAEEL2.453e-2532.73Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ARP6_HUMAN4.184e-2528.63Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_CHICK4.184e-2529.07Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ARP6_MOUSE2.076e-2428.19Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_YARLI1.031e-2329.38Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP3_ACACA2.998e-2330.32Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP3_YEAST6.680e-2331.05Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ARP3_DROME8.724e-2331.36Actin-related protein 3 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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