CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22
Identity = 71/231 (30.74%), Postives = 114/231 (49.35%), Query Frame = -1
Query:  305 DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQP---------------------------SMIGMESA--GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP---SIVHRKC 892
            +L  RD TD+  +   +R Y            + KE+ A I+     ++  +  ++  E  +E PDG  +  GAER++ PE LF P                           S+    S   GI +   N I +CDVDIR  L  N+++ GG+++  G + R+  E+S L P S ++K+ A     ER Y+ W+GGSIL+SL TF Q+WI++ EY+E G    +++ ++C
Sbjct:  219 ELRPRDTTDSYHQFQVQRVYD-----------EWKEECALIS-----DVPFSSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVPGSDEEMNEEPSKPIEQTENNEVSQQDSSVTNTSSRILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_TAKRU (Actin-related protein 3 OS=Takifugu rubripes GN=actr3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22
Identity = 73/218 (33.49%), Postives = 104/218 (47.71%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS-SAVEKSYE-----LPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR--------------MSKEISA--LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T    ++L ER          E  + +KE+ +Y+  D  +E     T  S   K Y            I +G ERF  PE+ F P     + +  I E     I  C +D+R+ LY NIVLSGGSTMF     R              MS+E+S   L P  + ++V+    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI
Sbjct:  190 IKHIPIAGRDITYFTQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFNKYDTDGSKWIKQYTGINAITKKEFTIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKMSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.538e-22
Identity = 70/220 (31.82%), Postives = 114/220 (51.82%), Query Frame = -1
Query:  308 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA--KTSSAVEKSYELPD------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRK 907
            A+ R+D+ G+ LT+ L ++++ R Y+     E  IV ++KE + Y++ ++++++E    K  S +E  Y LPD                   QV+ +  ERF  PE+LF PS I +  AGI E    S+     +I+  L  N+V  GG+  FPG   R+S E+ +LAP++ ++KV  P +     W   S +  L  +    I +SEY E G +I+ RK
Sbjct:  182 AVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.538e-22
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS-----------SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISA----------------LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T  + ++L ER          E  + +KE+ +Y+  D  +E     T            +A+ K         I +G ERF  PE+ F P     + +  I E     I  C +D+R+ LY NIVLSGGSTMF     R+ +++                  L P  + ++V+    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI
Sbjct:  190 IKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFNKYDTDGTKWIKQYTGINAISKKEF-----TIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSI 407          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.315e-22
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  305 KSYELPDGQVITIGAERFRCPEVLFQPSMIGME----------SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 715
            + +E PDG     G +R+R  E LF      ++          +  I E    ++   DVD+R  L  N+V++G S++  G  DR+++E+  L P   ++++ AP    ER++S WIGGSILASL TF QMWI+K E+DE GP+IV ++C
Sbjct:  323 RPFEFPDGYNQVFGVDRYRVVESLFDAKATILDPDSQFPAPTPAQTIPELIKAALNGVDVDLRPHLLANVVVTGASSLLYGFTDRLNQELMQLYPGP-RVRISAPGNTSERRFSSWIGGSILASLGTFHQMWISKKEFDEHGPNIVEKRC 471          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.315e-22
Identity = 73/222 (32.88%), Postives = 106/222 (47.75%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ--------VITIGAERFRCPEVLFQPSMIG---MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T  + ++L ER          E  + +KEK  YI  D  +E   AK      K  +   G         VI +G ERF  PE+ F P       MES  I +     I  C +D+R+ LY N+VLSGGSTMF     R+ +++  +                 P  ++++VV    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI
Sbjct:  190 IKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKEF--AKYDVDPRKWIKQYTGINAINQKKFVIDVGYERFLGPEIFFHPEFANPDFMES--ISDVVDEVIQNCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLRLSEELSGGRIKPKPVEVQVVTHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSI 407          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.330e-22
Identity = 61/189 (32.28%), Postives = 104/189 (55.03%), Query Frame = -1
Query:  302 YSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGME-------SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPS-IVHRKCF 835
            +SFT      I+ + K+ +  +    +  L    +  A ++ +E P G   T GA+R    E LF+PS    +       + G+ E   ++I   +VD+R  L  NIV++GG ++  G++DR+SK+++  A S +K++V A     ER++  WIGGS+L SL +F Q+W++K E+ E G   +V +K F
Sbjct:  247 HSFTDLQVSRILSEFKDSMCQVN---DVPLTPEISGEAADRVFEFPTGYSTTFGADRLSTSESLFKPSEYPFDGETVPDTARGLSEMVVDTINASNVDVRAHLANNIVITGGGSLVQGLSDRVSKDVTQ-ALSGLKVRVAAASNQEERRHGAWIGGSVLGSLGSFHQLWVSKQEWQEKGGDYLVEKKRF 431          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.330e-22
Identity = 72/222 (32.43%), Postives = 106/222 (47.75%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ--------VITIGAERFRCPEVLFQPSMIG---MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T  + ++L ER          E  + +KEK  YI  D  +E   AK      K  +   G         +I +G ERF  PE+ F P       MES  I +     I  C +D+R+ LY N+VLSGGSTMF     R+ +++  +                 P  ++++VV    ++Y+VW GGS+LAS   F Q+   K +Y+E GPSI
Sbjct:  190 IKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVREF--AKYDVDPRKWIKQYTGINAINQKKFIIDVGYERFLGPEIFFHPEFANPDFMES--ISDVVDEVIQSCPIDVRRPLYKNVVLSGGSTMFRDFGRRLQRDLKRVVDARLKLSQELSGGRIKPKPVEVQVVTHHMQRYAVWFGGSMLASTPEFFQVCHTKKDYEEYGPSI 407          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 58/216 (26.85%), Postives = 108/216 (50.00%), Query Frame = -1
Query:  329 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE---TAKTSSAVEKSYELPD---------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 904
            I R+D+ G+ LT+ L ++++ R        E  +V  +KE + ++A D++Q ++   + +    V   Y LPD                      Q++++  ERF  PE+LF PS IG++  GI E   + +  C  +  ++L  NI++ GGS  FPG   R+ +++ AL P  +++ ++ P +     W GG  +A+   F++    + +Y+E G
Sbjct:  178 IRRIDMGGKALTNQLKELISYR--HLNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRGYVRVPGKPREDEEQQQMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYG 391          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.385e-22
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = -1
Query:  305 SFTTTAEREIVRDMKE----------KLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQ-----PSMIGMESAGIHETTYNSIMKC-----DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 832
            S+ T  E   + + KE          KL+    +     E AK+S    + +E PDG     G +R+R  E LF      P    +  A     T   ++K      DVD+R  L  N+V++G S++  G  DR+++E+    P   ++++ A     ERK+  W+GGSILASL TF QMWI+K EYDE GP+IV ++C
Sbjct:  270 SYRTLMEERTLSEFKECVVQVWPGPNKLSATGPNGVSNEEVAKSSPG--RPFEFPDGYNQVFGIDRYRVVESLFDAKAAIPDPESVFPAPTQAQTVPELIKAALNGVDVDVRPHLLANVVVTGASSLLYGFTDRLNQELMQSYPGP-RVRISASGNTAERKFGSWVGGSILASLGTFHQMWISKKEYDEHGPNIVEKRC 465          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP4_SCHPO1.488e-2230.74Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP3_TAKRU1.488e-2233.49Actin-related protein 3 OS=Takifugu rubripes GN=ac... [more]
ARP6_SCHPO2.538e-2231.82Actin-like protein arp6 OS=Schizosaccharomyces pom... [more]
ARP3_CHICK2.538e-2230.49Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ARP4_EMENI3.315e-2238.00Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP3B_HUMAN3.315e-2232.88Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]
ARP4_YARLI4.330e-2232.28Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
ARP3B_MOUSE4.330e-2232.43Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP6_DROME5.655e-2226.85Actin-like protein 13E OS=Drosophila melanogaster ... [more]
ARP4_ASPFU7.385e-2234.17Actin-related protein 4 OS=Aspergillus fumigatus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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