CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.904e-18
Identity = 63/245 (25.71%), Postives = 110/245 (44.90%), Query Frame = -1
Query:  308 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA----------KTSSAVEKSYELPDGQ----------------------------------VITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGS-ILASLSTFQQMWIAKSEYDESGPSIVHRK 907
            AI RLD+ G+ LT+ L ++++ R Y+     E  I+ ++KE + +++ ++  +LE              +  +   Y LPD                                    V+ +G ERF  PE+LF PS IGM+ AGI +    S+      +      N+++ GG+T+ PG  +R+  E+  +A +   ++V  P +   S W+G S + A+ +  ++  I + EY E G S   RK
Sbjct:  221 AIRRLDIGGKHLTNYLKEMVSMRQYNMVD--ETYIMNEVKEAVCFVSNNFAGDLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTGKKGFMRPHDPLSNAKKRKSILSGGNAEALSEDVLILGNERFTVPEILFTPSDIGMKQAGIPDIILQSLSVLPTGLHPSFLANVLVVGGNTLIPGFLERLESELRQIASAECVVRVRRPHDPIRSTWLGASRLAANRAELRKFAITRQEYQEYGSSWAGRK 463          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_CANGA (Actin-related protein 4 OS=Candida glabrata GN=ARP4 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.793e-18
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  329 ESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 619
            E  GI +   +SI  CDVDIR  L  N+V++GGS+  PG++DR+  E++   P+ +K +V+A     ER+Y  W+GGSIL+SL TF Q+WI K EY+E G
Sbjct:  385 ELPGIVDLISSSISSCDVDIRASLAHNLVITGGSSTIPGLSDRILNELNMKFPA-LKFRVLATGQSIERQYQSWLGGSILSSLGTFHQLWIGKKEYEEVG 483          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 66/220 (30.00%), Postives = 104/220 (47.27%), Query Frame = -1
Query:  311 AILRLDLAGRDLTDALMKILTERGY--SFTTTAEREIVRDMKEKLAYIALDYEQELET--AKTSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIGMES-AGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE--------------ISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHR 907
            +I  + LAGRD+T  +  +L +R    S   TAER     +KE+  Y+  D  +E      +    ++ + E   G   TI  G ERF  PE+ F P +   +    + E   N +    +D+RK LY NIVLSGGST+F    +R+ ++              +S      + + V++   ++ +VW GGS+LA    F      K++Y+E G SI  R
Sbjct:  205 SIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_KLULA (Actin-related protein 4 OS=Kluyveromyces lactis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 44/101 (43.56%), Postives = 69/101 (68.32%), Query Frame = -1
Query:  326 ESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 619
            E AGI +    S+M+ DVD+R  L  N+VL+GG++  PG++DR+  E++   P+ +K ++++     ER+Y  W+GGSILASL TF Q+W+ + EY+E GP
Sbjct:  412 EVAGIVDLINKSMMEADVDLRATLAHNVVLTGGTSKIPGLSDRIMHELNKSLPA-LKFRMLSSGHLRERQYQGWLGGSILASLGTFHQLWVGREEYEEVGP 511          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.441e-17
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  329 ESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 619
            E +G+ +  Y+SIM  DVD+R  L  N+V++GG++  PG+ DR+S E++   P ++K +++      ER+Y  W+GGSILASL TF Q+W+ K EY E G
Sbjct:  371 EVSGLADLIYSSIMSTDVDLRTTLSHNVVITGGTSSLPGLMDRISAELNRSLP-ALKFRMLTSGQLRERQYQGWLGGSILASLGTFHQLWVGKQEYAEVG 469          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.441e-17
Identity = 62/218 (28.44%), Postives = 100/218 (45.87%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE----KSYELPDGQVIT--IGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AG+D+T  + +++ ERG +       ++ R +KE   Y   D  +E        A      K  +   G   T  +G ERF  PEV F P +   + +  +       I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++++VW GGS+L+S   F      K EY+E G SI
Sbjct:  199 IKSIPIAGKDVTLFIQQLMRERGENIPPEDSFDVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYTCDVGYERFLGPEVFFNPEIYSNDFTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_HUMAN (Actin-related protein 5 OS=Homo sapiens GN=ACTR5 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.477e-17
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = -1
Query:  305 VRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWIAKSEYDESGPSIVHRKC 802
            + D++    +  L  E+     K  + V+  + L     + +G ER R PE++FQPS+IG E AGI ET    + +   DI++ L  N+ L+GG+TM+PG+  RM KE+  + P     +V          W G    A +     ++WI + EY+E G   +   C
Sbjct:  403 LEDVESMNDFDPLFSEETPGVEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYPKDIQEMLVQNVFLTGGNTMYPGMKARMEKELLEMRPFRSSFQVQLASNPVLDAWYGARDWALNHLDDNEVWITRKEYEEKGGEYLKEHC 569          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSJ (Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = -1
Query:  311 VRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHR 802
            ++DM       A   +Q  E  K  +   + Y       I+IG ERFRCPE+LFQP MIG++ AGI E    S+ +   D  +++ L  +I+++GG ++ PG+  R+   I    P    +K+V   +     W G +  A+ S F +   + ++Y E G ++ HR
Sbjct:  409 IQDMDPTFVNKAEAVQQTPEPPKVRTLTAEDYR------ISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHR 568          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSI (Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = -1
Query:  311 VRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHR 802
            ++DM       A   +Q  E  K  +   + Y       I+IG ERFRCPE+LFQP MIG++ AGI E    S+ +   D  +++ L  +I+++GG ++ PG+  R+   I    P    +K+V   +     W G +  A+ S F +   + ++Y E G ++ HR
Sbjct:  409 IQDMDPTFVNKAEAVQQTPEPPKVRTLTAEDYR------ISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHR 568          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.637e-16
Identity = 47/172 (27.33%), Postives = 84/172 (48.84%), Query Frame = -1
Query:  305 AEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWIAKSEYDESGPSIVHRKC 817
            +  + + D++    +  L  E++ E  K  +AV+  + L +   + +G ER R PE++FQPS+IG +  GI ET    + +   + +  L  N+ L+GG+ M+PG+  R+ KE+  + P     +V          W G    A    T ++ WI + +Y+E G   +   C
Sbjct:  402 SSEQSLEDVESINEFEPLFAEEQPEAEKPVAAVQPVFNLAEYHQLFLGTERIRAPEIIFQPSLIGEDQTGIAETMQYVLERYSKEQQALLVQNVFLTGGNAMYPGLKARVQKELLEMRPFQSSFQVHLASSPTLDAWYGARDWAVEHMTREEGWITRKDYEEKGGEYLKEHC 573          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP6_ASPFU2.904e-1825.71Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP4_CANGA3.793e-1847.00Actin-related protein 4 OS=Candida glabrata GN=ARP... [more]
ARP3_SCHPO4.954e-1830.00Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP4_KLULA1.104e-1743.56Actin-related protein 4 OS=Kluyveromyces lactis GN... [more]
ARP4_ASHGO1.441e-1744.00Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP3_ARATH1.441e-1728.44Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP5_HUMAN5.477e-1730.54Actin-related protein 5 OS=Homo sapiens GN=ACTR5 P... [more]
ARP5_ORYSJ1.594e-1630.72Actin-related protein 5 OS=Oryza sativa subsp. jap... [more]
ARP5_ORYSI1.594e-1630.72Actin-related protein 5 OS=Oryza sativa subsp. ind... [more]
ARP5_CHICK4.637e-1627.33Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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