CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_ARATH (Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = -1
Query:  329 EREIVRDMKEKLAYIALDYEQELE--TAKTSSAVEKSYELPDGQV-ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 814
            E E+ R +  +L  I   + Q++E   ++TS  V +   L +    I IG ERFRCPE+LF P++IG++  G+ E    SI +    + ++ + L  +I+++GG ++ PG+ +R+   I  + P    I VV   +     W G S  A+   F      K +YDE G
Sbjct:  410 EAELAR-LSSRLQEIDPTFVQKVEGELSQTSGEVPRVRPLTEEDYKIVIGIERFRCPEILFHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEERLTSSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNFLGNAFTKMDYDEKG 576          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -1
Query:  788 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMK 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+K
Sbjct:  154 PHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDVK 195          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_MOUSE (Actin-related protein 5 OS=Mus musculus GN=Actr5 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.544e-14
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:  305 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ--MWIAKSEYDESGPSIVHRKC 727
            + V+  + L     +++G ER R PE++FQPS+IG E AGI ET +  + +    I+  L  N+ L+GG+ M+PG+  R+ KE+  + P     +V          W G    A L   +    W+ + +Y+E G   +   C
Sbjct:  429 TTVQPVFNLAAYHQLSVGTERIRAPEIIFQPSLIGEEQAGIAETLHFVLDRYPKAIQDTLVQNVFLTGGNVMYPGMKARVEKELLEMRPFQSSFQVQLASNPVLDAWYGARDWA-LDHLEDSGAWVTRKDYEEKGGEYLKEHC 570          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.402e-14
Identity = 41/117 (35.04%), Postives = 61/117 (52.14%), Query Frame = -1
Query:  329 IGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 679
            IG ER R PE+LFQPSMIG++ AG+  T    +     + +  L GN++L+GG     G  +R+S+E+ A+ P      ++         W G S  A+   F+Q  I +  YDE G
Sbjct:  510 IGVERIRVPEILFQPSMIGVQEAGLTGTIDYVLKLFPKEDQVKLVGNVMLTGGCANIRGFKERLSRELQAILPFQSVYNLMVAGSPSLDAWRGASQFANSQEFKQSLITRQLYDECG 626          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_DEBHA (Actin-related protein 4 OS=Debaryomyces hansenii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.263e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  329 QPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 640
            +PS    +  G+     +++   D+D+R  +  NI+++GG ++ P + +R+  E+S   P  +KI++ A     ER    WIGGS+LASL TF QMW++K EY+E+G
Sbjct:  377 KPSSKTSQIRGLTHLITHTLSTIDIDLRSSVAHNIIVTGGVSLIPQLTERLYSELSNSNPG-LKIRLHAVGNSSERFNQAWIGGSVLASLGTFHQMWVSKQEYEEAG 482          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_CANAL (Actin-related protein 4 OS=Candida albicans GN=ARP4 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.069e-12
Identity = 59/221 (26.70%), Postives = 94/221 (42.53%), Query Frame = -1
Query:  329 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS--YELPDGQVITIGAERFRCPEVLFQPSMIGMESA------------------------------------------------GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 832
            SF      +I  + KE L     +      T  T++  + S  +ELP GQ I I  +RF+  E +F P++    ++                                                GI +   +++   D+D+R  L  NI+++GG ++   + +R+  E+S   P  +KI++ A     ER    WIGGS+LASL TF QMW+ K EY+E G
Sbjct:  242 SFLEFQNEKIYHNFKEILEVPEKNSSSGTTTTTTTTNKDSSRLFELPTGQSIVI--DRFKIAESIFDPTIYKFTNSKLSFPPNNGEISITQANEYRPLKRVRKNDDDEEEDSNQSTPKPEVNIRGISQLISHTLSNIDIDLRASLANNIIVTGGVSLISQLTERLYLELSNNNPG-LKIRLHAVGNSTERINQAWIGGSVLASLGTFHQMWVTKEEYNEVG 459          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 44/163 (26.99%), Postives = 79/163 (48.47%), Query Frame = -1
Query:  329 AEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 817
            A+ E + + ++ L++  ++++      +T SA E +Y+L        G E  R PE+LFQPSMIG   AG+ E     +       ++ +  ++ L+GG   F G+ +R+++E   + P   K  +    +   S W+G  + AS   F Q    + +Y E G
Sbjct:  478 ADNEQLLEFEKILSHYDVNFDDG-NAVQTQSAAE-NYQLH------FGVEDIRVPEILFQPSMIGSPEAGLAELIAFVLKLFTAQEQQRMVEHVYLTGGCAQFRGLKERLAREFLEMRPFQSKFSIYESDDHTLSAWLGACVQASQPNFGQTLTTRKDYQEHG 632          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.381e-12
Identity = 43/183 (23.50%), Postives = 82/183 (44.81%), Query Frame = -1
Query:  317 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIV 865
            +L K L E    FT     + + D +  L Y       + +    + A +          + +  E+ R PEV+F PS++G++ AGI E   + + +  ++ ++ L  N++++GG    PG+  R+ +E++++ P    I V          W G S  +    F+   + + EY E GP  +
Sbjct:  539 SLEKQLLEYDSQFTQANTYDTLNDPRATLLYAFTRGVSDFDVNDVAQAFQ----------LHLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_DROME (Actin-related protein 5 OS=Drosophila melanogaster GN=Arp5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 38/116 (32.76%), Postives = 56/116 (48.28%), Query Frame = -1
Query:  329 GAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 676
            G E  R PEVLFQPSMIG   AG+ E     +       ++ L  ++ L+GG   F G+ +R+ KE+  + P   K  +    E   S W+G  + A   TF Q    + ++ E G
Sbjct:  514 GVENIRVPEVLFQPSMIGCSEAGLAELIAFVLKLFPAAEQQRLVEHVYLTGGCAQFKGLKERLIKELMEMRPFQSKFAIYESDEPTLSAWLGACVHAGEPTFGQTLTTRQDHQEHG 629          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_YEAST (Actin-like protein ARP6 OS=Saccharomyces cerevisiae GN=ARP6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 59/218 (27.06%), Postives = 95/218 (43.58%), Query Frame = -1
Query:  326 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIA-LDYEQELETAKTSSAVEKSYELPD----------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKSEYDESGP 907
            A+ +LD+ GR LT  L + L+ R Y+     E  +V ++KE+  +++ + Y    +T K   A+E  Y LPD                       Q+IT+  E F  PE  F P +  +   GI E    S+      +R  + GNIV +GG+   P  A R++ E+    P+     V  P  +     W   S  A   ++++  + + EY E GP
Sbjct:  212 AVKKLDIGGRFLTGLLKETLSFRHYNMMD--ETILVNNIKEQCLFVSPVSYFDSFKT-KDKHALE--YVLPDFQTSFLGYVRNPRKENVPLPEDAQIITLTDELFTIPETFFHPEISQITKPGIVEAILESLSMLPEIVRPLMVGNIVCTGGNFNLPNFAQRLAAELQRQLPTDWTCHVSVPEGDCALFGWEVMSQFAKTDSYRKARVTREEYYEHGP 424          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP5_ARATH8.744e-1530.95Actin-related protein 5 OS=Arabidopsis thaliana GN... [more]
ACT10_SOLTU8.744e-1595.24Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C... [more]
ARP5_MOUSE2.544e-1430.07Actin-related protein 5 OS=Mus musculus GN=Actr5 P... [more]
ARP5_AEDAE7.402e-1435.04Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP4_DEBHA1.263e-1336.45Actin-related protein 4 OS=Debaryomyces hansenii G... [more]
ARP4_CANAL1.069e-1226.70Actin-related protein 4 OS=Candida albicans GN=ARP... [more]
ARP5_DROPS1.823e-1226.99Actin-related protein 5 OS=Drosophila pseudoobscur... [more]
ARP5_SCHPO2.381e-1223.50Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP5_DROME6.928e-1232.76Actin-related protein 5 OS=Drosophila melanogaster... [more]
ARP6_YEAST1.543e-1127.06Actin-like protein ARP6 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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