CX069434

Overview
NameCX069434
Unique NameCX069434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_POPTR (30S ribosomal protein S3, chloroplastic OS=Populus trichocarpa GN=rps3 PE=3 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 2.154e-105
Identity = 184/218 (84.40%), Postives = 207/218 (94.95%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQ H+SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQDHYSLWFAQPKNFFEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_SPIOL (30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea GN=rps3 PE=1 SV=3)

HSP 1 Score: 380.948 bits (977), Expect = 4.799e-105
Identity = 185/218 (84.86%), Postives = 207/218 (94.95%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSH+SLWF++PKNY EGLQEDQKIR+ IKNY++KN + SSGVEGIARIEIQKRIDLIQVII++GFPKLL+ENRP+ +E+L++NVQKELNCVNRK+NIAITRI  PYG PNILAEFIAGQLK+RVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+ E+
Sbjct:    1 MGQKINPLGFRLGTTQSHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa GN=rps3 PE=3 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 4.799e-105
Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 752
            MGQKINP+GFRLGTTQ HHSLWFA+PKNY EGLQED+KIR +I+NY++KN++ SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+QKE + VNRK+NIAITRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIKIWIF+D
Sbjct:    1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDKKIRTYIQNYVQKNMKTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNLQKEFHSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKIWIFID 216          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.492e-103
Identity = 187/217 (86.18%), Postives = 201/217 (92.63%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKINPLGFRLG TQ HHSLWFA+PKNY E LQEDQKIR+ IKNYIKKN++I S VEGIA IEIQKRIDLIQVIIY+GFPKLL+E++  +IEELQMN+QKELN VNRK+N+AITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIFVDE
Sbjct:    1 MGQKINPLGFRLGATQGHHSLWFAQPKNYSEDLQEDQKIRDCIKNYIKKNMKIFSSVEGIACIEIQKRIDLIQVIIYMGFPKLLIEHQ--KIEELQMNIQKELNSVNRKLNMAITRIANPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIKAKIDYCSYTVRTIYGALGIKIWIFVDE 215          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_COFAR (30S ribosomal protein S3, chloroplastic OS=Coffea arabica GN=rps3 PE=3 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.663e-103
Identity = 184/218 (84.40%), Postives = 201/218 (92.20%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQ HHSLWF + KNY EGLQEDQ+IRN IKNY++KN +ISSGVEGIARIEIQKRIDLIQVII++GFPK LLEN+PR IEELQ N+QK+ N VNRK NIAIT+I  PYG+PNILAE+IAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIR GRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFTQAKNYSEGLQEDQQIRNCIKNYVQKNTKISSGVEGIARIEIQKRIDLIQVIIFMGFPKPLLENQPRGIEELQTNLQKKCNSVNRKFNIAITKIAKPYGNPNILAEYIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIRRGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.001e-102
Identity = 183/217 (84.33%), Postives = 199/217 (91.71%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKINPLGFRLGTTQ HHSLWF++PKNY E LQEDQKIRNFIKNY++KN+  SSGV GIARI+IQK IDLI+VII++GFPKLL+ENRPR  EELQM +QKELNCVNRK+NIAITRI  PYG+P ILAEFIAGQLKNRVSFRKAMKKAIEL E+ADTKGIQVQIAGR+DGKEIAR EWIREGRVP QTI AKIDYCSY VRTIYGVLGIKIWIF+DE
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSESLQEDQKIRNFIKNYVQKNMITSSGVTGIARIDIQKGIDLIKVIIFMGFPKLLIENRPRATEELQMTLQKELNCVNRKLNIAITRIAKPYGNPKILAEFIAGQLKNRVSFRKAMKKAIELAEKADTKGIQVQIAGRIDGKEIARVEWIREGRVPRQTIRAKIDYCSYPVRTIYGVLGIKIWIFLDE 217          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.803e-102
Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQ+HHS+WFA+PK+Y EGLQEDQKIR+ IKNY++KN RI   VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQ+N+QKE N +NRK+NIAITRI  PYG PNILAE+IAGQLK+RVSFRKAMKKAIELTEQ DTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQNHHSVWFAQPKSYSEGLQEDQKIRDCIKNYVQKNKRIPL-VEGIARIEIQKRIDLIQVIIYMGFPKLLIEDRPRGIEELQINLQKEFNSMNRKLNIAITRIAKPYGQPNILAEYIAGQLKSRVSFRKAMKKAIELTEQTDTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 217          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.803e-102
Identity = 183/218 (83.94%), Postives = 200/218 (91.74%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLG TQ HHSLWFA PK Y EGLQEDQKIR+ I+NY++KN+RI SGVEGIARIEIQKRIDLIQVII++GFPKL++++  R+IEELQ+NVQKE N  NRK+NIAITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC Y VRTIYG+LGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIQNYVQKNMRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.036e-99
Identity = 180/218 (82.57%), Postives = 198/218 (90.83%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSHHS+WFA+PKNY  GLQED+KI++ IKNY++KN +ISSGVEGIARI+I+KRIDLIQVIIY+GFPK L E  P+ IEELQ N+QKE N VN+K+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF  E+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSVWFAQPKNYSGGLQEDKKIKDCIKNYVQKNRKISSGVEGIARIKIKKRIDLIQVIIYMGFPKFL-EGNPQGIEELQSNIQKEFNSVNQKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.767e-99
Identity = 178/218 (81.65%), Postives = 201/218 (92.20%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLGTTQSH S+WFA+P NY E L+ED+KIR+ IK YI+K I+ISSGVEGI RI+IQKRIDLIQVIIY+GFPKLL++ +PRRIEELQ+NVQK++N VNRK+NIAITRI N Y  PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIK+WIF++++
Sbjct:    1 MGQKINPLGFRLGTTQSHDSIWFAQPTNYSENLKEDKKIRDCIKTYIQKTIKISSGVEGIGRIKIQKRIDLIQVIIYMGFPKLLIDGKPRRIEELQINVQKKMNYVNRKLNIAITRIANAYRDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKVWIFLNKE 218          
The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_POPTR2.154e-10584.4030S ribosomal protein S3, chloroplastic OS=Populus... [more]
RR3_SPIOL4.799e-10584.8630S ribosomal protein S3, chloroplastic OS=Spinaci... [more]
RR3_LACSA4.799e-10585.1930S ribosomal protein S3, chloroplastic OS=Lactuca... [more]
RR3_MORIN4.492e-10386.1830S ribosomal protein S3, chloroplastic OS=Morus i... [more]
RR3_COFAR7.663e-10384.4030S ribosomal protein S3, chloroplastic OS=Coffea ... [more]
RR3_IPOPU1.001e-10284.3330S ribosomal protein S3, chloroplastic OS=Ipomoea... [more]
RR3_PLAOC3.803e-10284.8630S ribosomal protein S3, chloroplastic OS=Platanu... [more]
RR3_CUCSA3.803e-10283.9430S ribosomal protein S3, chloroplastic OS=Cucumis... [more]
RR3_RANMC1.036e-9982.5730S ribosomal protein S3, chloroplastic OS=Ranuncu... [more]
RR3_LOTJA1.767e-9981.6530S ribosomal protein S3, chloroplastic OS=Lotus j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D09-G18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bp
GTACCGCGGCCCCCCCTCGAGTGCTCAAAAAACACTAGATTAATAAATAA
AAAAAAGAAAAAAAAAACTATGACATGTCATGATACATATAGGAATGGGG
GATTATGGGACAAAAAATAAATCCACTAGGTTTCCGGCTTGGTACAACAC
AAAGTCATCATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGT
CTACAAGAAGATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAA
AAATATCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTC
AAAAAAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAA
TTATTACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGT
ACAAAAAGAACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACAC
GAATTACAAATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCC
GGACAATTAAAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTAT
TGAATTAACGGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAG
GGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGT
AGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATAC
GGTTCGAACTATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAG
ACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGA
AATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAA
TGAGCCT
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