CX069434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_POPTR (30S ribosomal protein S3, chloroplastic OS=Populus trichocarpa GN=rps3 PE=3 SV=1) HSP 1 Score: 382.104 bits (980), Expect = 2.154e-105 Identity = 184/218 (84.40%), Postives = 207/218 (94.95%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQ H+SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQDHYSLWFAQPKNFFEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_SPIOL (30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea GN=rps3 PE=1 SV=3) HSP 1 Score: 380.948 bits (977), Expect = 4.799e-105 Identity = 185/218 (84.86%), Postives = 207/218 (94.95%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQSH+SLWF++PKNY EGLQEDQKIR+ IKNY++KN + SSGVEGIARIEIQKRIDLIQVII++GFPKLL+ENRP+ +E+L++NVQKELNCVNRK+NIAITRI PYG PNILAEFIAGQLK+RVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+ E+ Sbjct: 1 MGQKINPLGFRLGTTQSHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_LACSA (30S ribosomal protein S3, chloroplastic OS=Lactuca sativa GN=rps3 PE=3 SV=1) HSP 1 Score: 380.948 bits (977), Expect = 4.799e-105 Identity = 184/216 (85.19%), Postives = 204/216 (94.44%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 752 MGQKINP+GFRLGTTQ HHSLWFA+PKNY EGLQED+KIR +I+NY++KN++ SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+QKE + VNRK+NIAITRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIKIWIF+D Sbjct: 1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDKKIRTYIQNYVQKNMKTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNLQKEFHSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKIWIFID 216
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 4.492e-103 Identity = 187/217 (86.18%), Postives = 201/217 (92.63%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKINPLGFRLG TQ HHSLWFA+PKNY E LQEDQKIR+ IKNYIKKN++I S VEGIA IEIQKRIDLIQVIIY+GFPKLL+E++ +IEELQMN+QKELN VNRK+N+AITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIFVDE Sbjct: 1 MGQKINPLGFRLGATQGHHSLWFAQPKNYSEDLQEDQKIRDCIKNYIKKNMKIFSSVEGIACIEIQKRIDLIQVIIYMGFPKLLIEHQ--KIEELQMNIQKELNSVNRKLNMAITRIANPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIKAKIDYCSYTVRTIYGALGIKIWIFVDE 215
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_COFAR (30S ribosomal protein S3, chloroplastic OS=Coffea arabica GN=rps3 PE=3 SV=1) HSP 1 Score: 373.629 bits (958), Expect = 7.663e-103 Identity = 184/218 (84.40%), Postives = 201/218 (92.20%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQ HHSLWF + KNY EGLQEDQ+IRN IKNY++KN +ISSGVEGIARIEIQKRIDLIQVII++GFPK LLEN+PR IEELQ N+QK+ N VNRK NIAIT+I PYG+PNILAE+IAGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIR GRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFTQAKNYSEGLQEDQQIRNCIKNYVQKNTKISSGVEGIARIEIQKRIDLIQVIIFMGFPKPLLENQPRGIEELQTNLQKKCNSVNRKFNIAITKIAKPYGNPNILAEYIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIRRGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 1.001e-102 Identity = 183/217 (84.33%), Postives = 199/217 (91.71%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKINPLGFRLGTTQ HHSLWF++PKNY E LQEDQKIRNFIKNY++KN+ SSGV GIARI+IQK IDLI+VII++GFPKLL+ENRPR EELQM +QKELNCVNRK+NIAITRI PYG+P ILAEFIAGQLKNRVSFRKAMKKAIEL E+ADTKGIQVQIAGR+DGKEIAR EWIREGRVP QTI AKIDYCSY VRTIYGVLGIKIWIF+DE Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSESLQEDQKIRNFIKNYVQKNMITSSGVTGIARIDIQKGIDLIKVIIFMGFPKLLIENRPRATEELQMTLQKELNCVNRKLNIAITRIAKPYGNPKILAEFIAGQLKNRVSFRKAMKKAIELAEKADTKGIQVQIAGRIDGKEIARVEWIREGRVPRQTIRAKIDYCSYPVRTIYGVLGIKIWIFLDE 217
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1) HSP 1 Score: 371.318 bits (952), Expect = 3.803e-102 Identity = 185/218 (84.86%), Postives = 203/218 (93.12%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQ+HHS+WFA+PK+Y EGLQEDQKIR+ IKNY++KN RI VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQ+N+QKE N +NRK+NIAITRI PYG PNILAE+IAGQLK+RVSFRKAMKKAIELTEQ DTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQNHHSVWFAQPKSYSEGLQEDQKIRDCIKNYVQKNKRIPL-VEGIARIEIQKRIDLIQVIIYMGFPKLLIEDRPRGIEELQINLQKEFNSMNRKLNIAITRIAKPYGQPNILAEYIAGQLKSRVSFRKAMKKAIELTEQTDTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 217
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1) HSP 1 Score: 371.318 bits (952), Expect = 3.803e-102 Identity = 183/218 (83.94%), Postives = 200/218 (91.74%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLG TQ HHSLWFA PK Y EGLQEDQKIR+ I+NY++KN+RI SGVEGIARIEIQKRIDLIQVII++GFPKL++++ R+IEELQ+NVQKE N NRK+NIAITRI NPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC Y VRTIYG+LGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGATQGHHSLWFAHPKKYSEGLQEDQKIRDCIQNYVQKNMRIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINVQKEFNSGNRKLNIAITRIGNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1) HSP 1 Score: 363.229 bits (931), Expect = 1.036e-99 Identity = 180/218 (82.57%), Postives = 198/218 (90.83%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQSHHS+WFA+PKNY GLQED+KI++ IKNY++KN +ISSGVEGIARI+I+KRIDLIQVIIY+GFPK L E P+ IEELQ N+QKE N VN+K+NIAITRI PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF E+ Sbjct: 1 MGQKINPLGFRLGTTQSHHSVWFAQPKNYSGGLQEDKKIKDCIKNYVQKNRKISSGVEGIARIKIKKRIDLIQVIIYMGFPKFL-EGNPQGIEELQSNIQKEFNSVNQKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1) HSP 1 Score: 362.459 bits (929), Expect = 1.767e-99 Identity = 178/218 (81.65%), Postives = 201/218 (92.20%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLGTTQSH S+WFA+P NY E L+ED+KIR+ IK YI+K I+ISSGVEGI RI+IQKRIDLIQVIIY+GFPKLL++ +PRRIEELQ+NVQK++N VNRK+NIAITRI N Y PNILAEFIAGQLKNRVSFRKAMKKAIELTEQA TKG+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIK+WIF++++ Sbjct: 1 MGQKINPLGFRLGTTQSHDSIWFAQPTNYSENLKEDKKIRDCIKTYIQKTIKISSGVEGIGRIKIQKRIDLIQVIIYMGFPKLLIDGKPRRIEELQINVQKKMNYVNRKLNIAITRIANAYRDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKVWIFLNKE 218 The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bpback to top |