CX069434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PINTH (30S ribosomal protein S3, chloroplastic OS=Pinus thunbergii GN=rps3 PE=3 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 2.035e-71 Identity = 137/214 (64.02%), Postives = 170/214 (79.44%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743 M QKINPLGFRLG TQ+ S WFA+ +NY + L+EDQKIR I+NY++ +I+ SS GIAR+EI+++IDLI+V IYIGFP LLL E R + IE+L+ +V L+ V+RK++IAI ++ PY PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI Sbjct: 1 MAQKINPLGFRLGVTQNERSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIKVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVKTIYGVLGIKIWI 214
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PINKO (30S ribosomal protein S3, chloroplastic OS=Pinus koraiensis GN=rps3 PE=3 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71 Identity = 137/214 (64.02%), Postives = 169/214 (78.97%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743 M QKINPLGFRLG TQ+ S WFA+ +NY + L+EDQKIR I+NY++ +I+ SS GIAR+EI+++IDLIQV IYIGFP LLL E R + IE+L+ +V L+ +RK++IAI ++ PY PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI Sbjct: 1 MAQKINPLGFRLGVTQNDRSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIQVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSADRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 214
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PELHO (30S ribosomal protein S3, chloroplastic OS=Pelargonium hortorum GN=rps3-A PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.922e-71 Identity = 137/219 (62.56%), Postives = 176/219 (80.37%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRP--RRIEELQMNVQKELNCV-NRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGK--EIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746 MGQKINPLGFRLGTTQ+HHS+WF K K+Y EGLQED KIR I+NYI+K RISS + I+RI+I K ID+++VIIY+GF +LL E+ P +I+ELQ++++K ++ + NRK+N+A+ ++ PYG P IL ++IA QLKNRVSFRK MKKA+EL E+A KGIQVQIAG + GK E+AR EW+R+GRVPLQT+ AKID+CS V TI GVLGIK+WIF Sbjct: 1 MGQKINPLGFRLGTTQTHHSIWFEKRKDYSEGLQEDHKIREHIQNYIEKE-RISSDSDVISRIQIDKSIDVVKVIIYMGFSQLLTEDEPPKTKIKELQVSLKKAIHFIQNRKLNLAVRKMKKPYGDPTILGKYIANQLKNRVSFRKVMKKAVELVEKAYKKGIQVQIAGCIGGKAQEMARVEWLRKGRVPLQTVTAKIDFCSTQVITIRGVLGIKVWIF 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PICAB (30S ribosomal protein S3, chloroplastic OS=Picea abies GN=rps3 PE=3 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 3.838e-70 Identity = 138/215 (64.19%), Postives = 169/215 (78.60%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRP-RRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743 M QKINPLGFRLG TQ+ S WFA+ +NY + L+EDQKIR I+NY++ +I+ SS GIAR+EI ++IDLIQV IYIGFP LLL E R + IE+L+ +V L+ V+RK++IAI ++ PY PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI Sbjct: 1 MAQKINPLGFRLGVTQNDRSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEISRKIDLIQVKIYIGFPNLLLIEGRGFQGIEKLKNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 215
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ANGEV (30S ribosomal protein S3, chloroplastic OS=Angiopteris evecta GN=rps3 PE=3 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 5.013e-70 Identity = 127/218 (58.26%), Postives = 166/218 (76.15%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFR+G TQ H+S WFA+PKNY + L+ED+K+R I+ Y++K I+ SS GIARIEI+ + DL+Q+ IY GFP L+E I++L+ N++ L ++KI I + + PYG P ILAE IA QL+NRV+FR+ +KKAIEL ++ D KGI++QIAGRL+G EIAR EW+REGRVPLQTI A I+YC Y +TIYGVLGIKIW+F DE+ Sbjct: 1 MGQKINPLGFRVGVTQQHYSYWFAQPKNYSKFLEEDEKVRTCIEKYVQKQIKNSSNYGGIARIEIEGKTDLLQIEIYTGFPDSLVEENGLGIDKLRTNIENLLKKKSQKIQITLKNVLQPYGEPRILAEHIALQLENRVAFRRTVKKAIELAKKTDIKGIKIQIAGRLNGNEIARVEWVREGRVPLQTIRAHINYCYYPAQTIYGVLGIKIWVFRDEE 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MARPO (30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha GN=rps3 PE=3 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 2.106e-68 Identity = 128/218 (58.72%), Postives = 171/218 (78.44%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKINPLGFRLG TQ+H S WFA K Y + +ED+KIR+ I+ Y++K+I+ SS GIAR+EI+++ DLIQV IY GFP LL+E+R + IE+L++NVQ L+ +R++ + + I PYG P ILA+ IA +L++RV+FR+ MKKAIEL ++ + KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y +TIYGVLGIK+WIF DE+ Sbjct: 1 MGQKINPLGFRLGITQNHRSYWFAN-KKYSKVFEEDKKIRDCIELYVQKHIKNSSNYGGIARVEIKRKTDLIQVEIYTGFPALLVESRGQGIEQLKLNVQNILSSEDRRLRMTLIEIAKPYGEPKILAKKIALKLESRVAFRRTMKKAIELAKKGNIKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRARINYCYYAAQTIYGVLGIKVWIFQDEE 217
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHAVU (30S ribosomal protein S3, chloroplastic OS=Chara vulgaris GN=rps3 PE=3 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 6.341e-65 Identity = 120/214 (56.07%), Postives = 162/214 (75.70%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746 MGQKI+PLGFRLG Q H+S WFAK +Y E LQED++IR+ I N+I+ ++R SS GIARI I +R DL+Q+ I+ GFP LL+ENR R +E L+ ++Q++++ RK+ + + + PY P ILAE+IA QL+NRV+FR+ MKKAI+L + +D KGI++QIAGRL+G EIAR EWI++GR+PLQ + A I YC Y TIYGVLGIK+WIF Sbjct: 1 MGQKIHPLGFRLGFIQEHYSHWFAKANSYSELLQEDKEIRSCIYNHIRNHVRNSSNYGGIARINIYRRTDLVQLQIHTGFPALLIENRIRGLEHLRRDIQEKIDHKKRKLRMTLVEVLKPYTEPTILAEYIALQLENRVAFRRVMKKAIQLAKISDIKGIKIQIAGRLNGAEIARNEWIQKGRLPLQMLRANIHYCHYPAHTIYGVLGIKVWIF 214
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ZYGCR (30S ribosomal protein S3, chloroplastic OS=Zygnema circumcarinatum GN=rps3 PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 9.157e-64 Identity = 123/224 (54.91%), Postives = 166/224 (74.11%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENR-PRR--------IEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA-DTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746 MGQKI+PLGFRLG TQ+HHS WFA NY E L+ED++IRN I+ Y++K +R SS IAR++IQK+ DL++V I+ P LL++ R P R IE L+ N+Q LN NRK+N+ ++++ PYG ILAE+IA QL++RV+FRK MK+AI+L ++ + +GI++QIAGRL+G EIAR EW REGRVPL T+ A+IDYC Y +TIYGVLGIK+W+F Sbjct: 1 MGQKIHPLGFRLGVTQNHHSTWFAPLNNYSELLKEDERIRNCIQQYVRKYVRSSSRSAEIARVQIQKKTDLVEVQIHTASPSLLVQTRVPNRSTNTQEIGIEYLRRNIQNTLNPGNRKLNMTLSQVAKPYGEAIILAEYIALQLESRVAFRKTMKQAIKLANKSGNARGIKIQIAGRLNGAEIARVEWAREGRVPLHTLRAQIDYCHYPAQTIYGVLGIKVWVF 224
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_SPIMX (30S ribosomal protein S3, chloroplastic OS=Spirogyra maxima GN=rps3 PE=3 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 2.664e-63 Identity = 123/219 (56.16%), Postives = 161/219 (73.52%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKI+PLGFRLG TQ H S WFA+P Y + L+ED+KIRN IK Y++ +IR SS GI+R++IQ++ DL+QV I+ GFP LL+E R + + L+ +V ++ RK+ I ++ I Y NILAE+IA QL++RV+FR+ MKKAI+L EQ KGI++QIAGRL+G EIAR EW REGRVPLQT+ A IDYC Y +T YGVLGIK+WIF E+ Sbjct: 1 MGQKIHPLGFRLGVTQEHLSNWFARPSRYSDLLEEDEKIRNCIKEYVRTHIRNSSNYGGISRVKIQRKTDLVQVDIHTGFPALLIEGRGKGLLVLKQSVLNSIS-TERKLKITLSEIDKYYAEANILAEYIALQLESRVAFRRTMKKAIQLAMEQGKVKGIKIQIAGRLNGAEIARIEWAREGRVPLQTLRACIDYCHYPAQTTYGVLGIKVWIFKGEE 218
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ADICA (30S ribosomal protein S3, chloroplastic OS=Adiantum capillus-veneris GN=rps3 PE=2 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 2.664e-63 Identity = 112/216 (51.85%), Postives = 158/216 (73.15%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 752 MG+KI+PLGFRLG +Q H+S WFA+ K+Y + L+ED+KIRN ++ YI+K+++ S G+ IEIQ++ DLIQ+ IY GFP LL+E + I +++ +++ L ++ + + +T + PYG P ILAE +A QLKNRV FR+ MKK IE+ + + GI++QIAGRL+G E+AR EW REGRVPLQT+ A I YC + +TIYGVLGIKIW+F D Sbjct: 1 MGRKIHPLGFRLGVSQKHYSYWFAQKKDYPKFLEEDRKIRNLVEKYIQKHVKSVSNYGGVGHIEIQRKTDLIQINIYTGFPDLLIEEQSLGISQMKQDLRNLLGLESQNLRVTLTGVIQPYGEPKILAEHVASQLKNRVPFRRTMKKTIEMAGRTNGGGIKIQIAGRLNGSEMARVEWAREGRVPLQTVEANISYCYHPAQTIYGVLGIKIWVFRD 216 The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bpback to top |