CX069434

Overview
NameCX069434
Unique NameCX069434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PINTH (30S ribosomal protein S3, chloroplastic OS=Pinus thunbergii GN=rps3 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.035e-71
Identity = 137/214 (64.02%), Postives = 170/214 (79.44%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743
            M QKINPLGFRLG TQ+  S WFA+ +NY + L+EDQKIR  I+NY++ +I+ SS   GIAR+EI+++IDLI+V IYIGFP LLL E R + IE+L+ +V   L+ V+RK++IAI ++  PY  PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:    1 MAQKINPLGFRLGVTQNERSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIKVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVKTIYGVLGIKIWI 214          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PINKO (30S ribosomal protein S3, chloroplastic OS=Pinus koraiensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 137/214 (64.02%), Postives = 169/214 (78.97%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743
            M QKINPLGFRLG TQ+  S WFA+ +NY + L+EDQKIR  I+NY++ +I+ SS   GIAR+EI+++IDLIQV IYIGFP LLL E R + IE+L+ +V   L+  +RK++IAI ++  PY  PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:    1 MAQKINPLGFRLGVTQNDRSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEIRRKIDLIQVKIYIGFPNLLLIEGRGQGIEKLRNDVLNMLDSADRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 214          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PELHO (30S ribosomal protein S3, chloroplastic OS=Pelargonium hortorum GN=rps3-A PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.922e-71
Identity = 137/219 (62.56%), Postives = 176/219 (80.37%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRP--RRIEELQMNVQKELNCV-NRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGK--EIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746
            MGQKINPLGFRLGTTQ+HHS+WF K K+Y EGLQED KIR  I+NYI+K  RISS  + I+RI+I K ID+++VIIY+GF +LL E+ P   +I+ELQ++++K ++ + NRK+N+A+ ++  PYG P IL ++IA QLKNRVSFRK MKKA+EL E+A  KGIQVQIAG + GK  E+AR EW+R+GRVPLQT+ AKID+CS  V TI GVLGIK+WIF
Sbjct:    1 MGQKINPLGFRLGTTQTHHSIWFEKRKDYSEGLQEDHKIREHIQNYIEKE-RISSDSDVISRIQIDKSIDVVKVIIYMGFSQLLTEDEPPKTKIKELQVSLKKAIHFIQNRKLNLAVRKMKKPYGDPTILGKYIANQLKNRVSFRKVMKKAVELVEKAYKKGIQVQIAGCIGGKAQEMARVEWLRKGRVPLQTVTAKIDFCSTQVITIRGVLGIKVWIF 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PICAB (30S ribosomal protein S3, chloroplastic OS=Picea abies GN=rps3 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.838e-70
Identity = 138/215 (64.19%), Postives = 169/215 (78.60%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLL-ENRP-RRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 743
            M QKINPLGFRLG TQ+  S WFA+ +NY + L+EDQKIR  I+NY++ +I+ SS   GIAR+EI ++IDLIQV IYIGFP LLL E R  + IE+L+ +V   L+ V+RK++IAI ++  PY  PNILAE+IA QL+ RV FRK MKKAIEL E+ + +GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:    1 MAQKINPLGFRLGVTQNDRSHWFAQQRNYSKDLREDQKIRTCIENYVRTHIKSSSNYGGIARVEISRKIDLIQVKIYIGFPNLLLIEGRGFQGIEKLKNDVLNMLDSVDRKLHIAIEKVAKPYRKPNILAEYIALQLEKRVPFRKTMKKAIELAEREEVEGIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVQTIYGVLGIKIWI 215          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ANGEV (30S ribosomal protein S3, chloroplastic OS=Angiopteris evecta GN=rps3 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.013e-70
Identity = 127/218 (58.26%), Postives = 166/218 (76.15%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFR+G TQ H+S WFA+PKNY + L+ED+K+R  I+ Y++K I+ SS   GIARIEI+ + DL+Q+ IY GFP  L+E     I++L+ N++  L   ++KI I +  +  PYG P ILAE IA QL+NRV+FR+ +KKAIEL ++ D KGI++QIAGRL+G EIAR EW+REGRVPLQTI A I+YC Y  +TIYGVLGIKIW+F DE+
Sbjct:    1 MGQKINPLGFRVGVTQQHYSYWFAQPKNYSKFLEEDEKVRTCIEKYVQKQIKNSSNYGGIARIEIEGKTDLLQIEIYTGFPDSLVEENGLGIDKLRTNIENLLKKKSQKIQITLKNVLQPYGEPRILAEHIALQLENRVAFRRTVKKAIELAKKTDIKGIKIQIAGRLNGNEIARVEWVREGRVPLQTIRAHINYCYYPAQTIYGVLGIKIWVFRDEE 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MARPO (30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha GN=rps3 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.106e-68
Identity = 128/218 (58.72%), Postives = 171/218 (78.44%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKINPLGFRLG TQ+H S WFA  K Y +  +ED+KIR+ I+ Y++K+I+ SS   GIAR+EI+++ DLIQV IY GFP LL+E+R + IE+L++NVQ  L+  +R++ + +  I  PYG P ILA+ IA +L++RV+FR+ MKKAIEL ++ + KGI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y  +TIYGVLGIK+WIF DE+
Sbjct:    1 MGQKINPLGFRLGITQNHRSYWFAN-KKYSKVFEEDKKIRDCIELYVQKHIKNSSNYGGIARVEIKRKTDLIQVEIYTGFPALLVESRGQGIEQLKLNVQNILSSEDRRLRMTLIEIAKPYGEPKILAKKIALKLESRVAFRRTMKKAIELAKKGNIKGIKIQIAGRLNGAEIARVEWAREGRVPLQTIRARINYCYYAAQTIYGVLGIKVWIFQDEE 217          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHAVU (30S ribosomal protein S3, chloroplastic OS=Chara vulgaris GN=rps3 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.341e-65
Identity = 120/214 (56.07%), Postives = 162/214 (75.70%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746
            MGQKI+PLGFRLG  Q H+S WFAK  +Y E LQED++IR+ I N+I+ ++R SS   GIARI I +R DL+Q+ I+ GFP LL+ENR R +E L+ ++Q++++   RK+ + +  +  PY  P ILAE+IA QL+NRV+FR+ MKKAI+L + +D KGI++QIAGRL+G EIAR EWI++GR+PLQ + A I YC Y   TIYGVLGIK+WIF
Sbjct:    1 MGQKIHPLGFRLGFIQEHYSHWFAKANSYSELLQEDKEIRSCIYNHIRNHVRNSSNYGGIARINIYRRTDLVQLQIHTGFPALLIENRIRGLEHLRRDIQEKIDHKKRKLRMTLVEVLKPYTEPTILAEYIALQLENRVAFRRVMKKAIQLAKISDIKGIKIQIAGRLNGAEIARNEWIQKGRLPLQMLRANIHYCHYPAHTIYGVLGIKVWIF 214          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ZYGCR (30S ribosomal protein S3, chloroplastic OS=Zygnema circumcarinatum GN=rps3 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.157e-64
Identity = 123/224 (54.91%), Postives = 166/224 (74.11%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENR-PRR--------IEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQA-DTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 746
            MGQKI+PLGFRLG TQ+HHS WFA   NY E L+ED++IRN I+ Y++K +R SS    IAR++IQK+ DL++V I+   P LL++ R P R        IE L+ N+Q  LN  NRK+N+ ++++  PYG   ILAE+IA QL++RV+FRK MK+AI+L  ++ + +GI++QIAGRL+G EIAR EW REGRVPL T+ A+IDYC Y  +TIYGVLGIK+W+F
Sbjct:    1 MGQKIHPLGFRLGVTQNHHSTWFAPLNNYSELLKEDERIRNCIQQYVRKYVRSSSRSAEIARVQIQKKTDLVEVQIHTASPSLLVQTRVPNRSTNTQEIGIEYLRRNIQNTLNPGNRKLNMTLSQVAKPYGEAIILAEYIALQLESRVAFRKTMKQAIKLANKSGNARGIKIQIAGRLNGAEIARVEWAREGRVPLHTLRAQIDYCHYPAQTIYGVLGIKVWVF 224          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_SPIMX (30S ribosomal protein S3, chloroplastic OS=Spirogyra maxima GN=rps3 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.664e-63
Identity = 123/219 (56.16%), Postives = 161/219 (73.52%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKI+PLGFRLG TQ H S WFA+P  Y + L+ED+KIRN IK Y++ +IR SS   GI+R++IQ++ DL+QV I+ GFP LL+E R + +  L+ +V   ++   RK+ I ++ I   Y   NILAE+IA QL++RV+FR+ MKKAI+L  EQ   KGI++QIAGRL+G EIAR EW REGRVPLQT+ A IDYC Y  +T YGVLGIK+WIF  E+
Sbjct:    1 MGQKIHPLGFRLGVTQEHLSNWFARPSRYSDLLEEDEKIRNCIKEYVRTHIRNSSNYGGISRVKIQRKTDLVQVDIHTGFPALLIEGRGKGLLVLKQSVLNSIS-TERKLKITLSEIDKYYAEANILAEYIALQLESRVAFRRTMKKAIQLAMEQGKVKGIKIQIAGRLNGAEIARIEWAREGRVPLQTLRACIDYCHYPAQTTYGVLGIKVWIFKGEE 218          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_ADICA (30S ribosomal protein S3, chloroplastic OS=Adiantum capillus-veneris GN=rps3 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.664e-63
Identity = 112/216 (51.85%), Postives = 158/216 (73.15%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 752
            MG+KI+PLGFRLG +Q H+S WFA+ K+Y + L+ED+KIRN ++ YI+K+++  S   G+  IEIQ++ DLIQ+ IY GFP LL+E +   I +++ +++  L   ++ + + +T +  PYG P ILAE +A QLKNRV FR+ MKK IE+  + +  GI++QIAGRL+G E+AR EW REGRVPLQT+ A I YC +  +TIYGVLGIKIW+F D
Sbjct:    1 MGRKIHPLGFRLGVSQKHYSYWFAQKKDYPKFLEEDRKIRNLVEKYIQKHVKSVSNYGGVGHIEIQRKTDLIQINIYTGFPDLLIEEQSLGISQMKQDLRNLLGLESQNLRVTLTGVIQPYGEPKILAEHVASQLKNRVPFRRTMKKTIEMAGRTNGGGIKIQIAGRLNGSEMARVEWAREGRVPLQTVEANISYCYHPAQTIYGVLGIKIWVFRD 216          
The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_PINTH2.035e-7164.0230S ribosomal protein S3, chloroplastic OS=Pinus t... [more]
RR3_PINKO3.472e-7164.0230S ribosomal protein S3, chloroplastic OS=Pinus k... [more]
RR3_PELHO5.922e-7162.5630S ribosomal protein S3, chloroplastic OS=Pelargo... [more]
RR3_PICAB3.838e-7064.1930S ribosomal protein S3, chloroplastic OS=Picea a... [more]
RR3_ANGEV5.013e-7058.2630S ribosomal protein S3, chloroplastic OS=Angiopt... [more]
RR3_MARPO2.106e-6858.7230S ribosomal protein S3, chloroplastic OS=Marchan... [more]
RR3_CHAVU6.341e-6556.0730S ribosomal protein S3, chloroplastic OS=Chara v... [more]
RR3_ZYGCR9.157e-6454.9130S ribosomal protein S3, chloroplastic OS=Zygnema... [more]
RR3_SPIMX2.664e-6356.1630S ribosomal protein S3, chloroplastic OS=Spirogy... [more]
RR3_ADICA2.664e-6351.8530S ribosomal protein S3, chloroplastic OS=Adiantu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D09-G18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bp
GTACCGCGGCCCCCCCTCGAGTGCTCAAAAAACACTAGATTAATAAATAA
AAAAAAGAAAAAAAAAACTATGACATGTCATGATACATATAGGAATGGGG
GATTATGGGACAAAAAATAAATCCACTAGGTTTCCGGCTTGGTACAACAC
AAAGTCATCATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGT
CTACAAGAAGATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAA
AAATATCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTC
AAAAAAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAA
TTATTACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGT
ACAAAAAGAACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACAC
GAATTACAAATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCC
GGACAATTAAAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTAT
TGAATTAACGGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAG
GGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGT
AGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATAC
GGTTCGAACTATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAG
ACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGA
AATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAA
TGAGCCT
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