CX069434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_STAPU (30S ribosomal protein S3, chloroplastic OS=Staurastrum punctulatum GN=rps3 PE=3 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.601e-60 Identity = 117/219 (53.42%), Postives = 156/219 (71.23%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKI+PLGFRLG TQSH S W +P Y E LQED+K+R IK Y++K +R + GI RIEIQ++ I+V I+ GFPKL +E R++E++ +Q L + K I++ + PY ILAE+IA Q++ RV+FRK +KKAI+L EQ + KGI++QIAGRL+G EIAR+EW REGRVPLQT+ A+IDYC Y TIYGVLGI++WIF ++ Sbjct: 1 MGQKIHPLGFRLGVTQSHLSNWCVQPSQYSELLQEDEKLRGCIKEYVRKYVRTAENYGGIDRIEIQRKTSAIKVEIHTGFPKLFVEKLGPRLKEIRREMQNTLQKSKHLKFIISLAEVEKPYAKATILAEYIAVQVERRVAFRKTIKKAIQLAKEQGNVKGIKIQIAGRLNGAEIARSEWAREGRVPLQTLRAQIDYCHYPAHTIYGVLGIRVWIFQEK 219
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PSINU (30S ribosomal protein S3, chloroplastic OS=Psilotum nudum GN=rps3 PE=3 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.787e-59 Identity = 119/220 (54.09%), Postives = 162/220 (73.64%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKN-YCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTK-GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKI+PLGFRLGTTQ+H S WFA+ K Y + ++ED++IRN I+ Y++K+ GIARIEI ++ DLI+V I++GF LL EN R E+L+ N++K +N N+K+ + + +I PY P +LAE+IA QL+NRV FRKA+KKA+EL K GI++QIAGRL+G EIAR EW REGRVPLQTI A I+Y Y +TIYG+LGIK+WI+ +++ Sbjct: 1 MGQKIHPLGFRLGTTQNHCSYWFAQSKKIYSKLVKEDKEIRNCIEKYVQKHTNNPFHYGGIARIEIYRKTDLIRVEIHMGFTDLLTENGGIRFEQLKSNIEKIVNSKNQKLCLILIKIDKPYTEPKVLAEYIALQLENRVVFRKAVKKALELAGNFKNKGGIKIQIAGRLNGIEIARVEWTREGRVPLQTIRAHINYYYYPAKTIYGILGIKVWIYQNDE 220
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHAGL (30S ribosomal protein S3, chloroplastic OS=Chaetosphaeridium globosum GN=rps3 PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.581e-58 Identity = 121/252 (48.02%), Postives = 163/252 (64.68%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISS----GVEGIARIEIQKRIDLIQVIIYI-GFPKLLL-----------------------------ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAI-ELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQK+NPLGFRLG TQ HHS WFA K + L+EDQKIR++I Y++K+IR SS G G+++IEI++ +LI V I+ GFP LL+ +N + +E++ VQ+ L N K + +++++NPY NI+AE+IA QL+NRV+FR+AMK+AI + E KGI++QI+GRL+G EIAR EW REGRVPLQT+ AKIDYC Y +T YGVLGIK+WIF E Sbjct: 1 MGQKVNPLGFRLGVTQEHHSYWFATNKQFAGFLEEDQKIRHYIYQYVQKHIRESSNTSYGYSGVSKIEIKRDTELIHVEIHTSGFPALLIKGQIKEKNRDKNKSNKNSALDQSVNKNQNKNTGQELEKMWRYVQRSLTLSNGKFRMTLSKVSNPYKEANIVAEYIARQLENRVAFRRAMKQAIKDAKENGQVKGIKIQISGRLNGAEIARVEWAREGRVPLQTLRAKIDYCHYPAQTKYGVLGIKVWIFQGE 252
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHLAT (30S ribosomal protein S3, chloroplastic OS=Chlorokybus atmophyticus GN=rps3 PE=3 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 5.762e-50 Identity = 102/218 (46.79%), Postives = 144/218 (66.06%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKI+PLGFRLG TQ H S WFAKP Y + LQED IRNF++ + GIARI+IQ++ D +++ + P L++ + +E L ++Q++ R+ I IT I P ++AEFIA +L+ R FR+AM++AI+ +A +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY +TIYG+LGIK+W+F EK Sbjct: 1 MGQKIHPLGFRLGITQDHRSHWFAKPAQYRQLLQEDNSIRNFLRTKLIN--------AGIARIDIQRKADQVEIEVRTARPGLIVGRSGKGVENLLRDLQEQFKN-KRRFRITITYIPEPDLESTLIAEFIAQRLEARAPFRRAMRQAIQRATRAGVEGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRANIDYSYCQAKTIYGILGIKVWMFKGEK 209
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PORPU (30S ribosomal protein S3, chloroplastic OS=Porphyra purpurea GN=rps3 PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.860e-49 Identity = 97/217 (44.70%), Postives = 146/217 (67.28%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKI+PLGFR+G TQ H S WFA K+Y LQED KIR+FI + IA+IEI ++ D ++V+I P ++L IE L+ ++ L+ N++I + + I++P ++AEFI QL+ RV+FR+A+++A++ ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC T YGVLG+K+W+F E Sbjct: 1 MGQKIHPLGFRIGITQKHRSSWFASSKDYSVLLQEDHKIRSFIHGKLSN--------ASIAKIEINRKADQVEVLIATARPGIVLGKSGAGIESLRNSLTLILD-PNKQIRVNVVEISDPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PORYE (30S ribosomal protein S3, chloroplastic OS=Porphyra yezoensis GN=rps3 PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 8.321e-49 Identity = 94/217 (43.32%), Postives = 147/217 (67.74%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKI+PLGFR+G TQ H S WFA K+Y LQED KIR+FI + + IA+IEI +++D ++++I P ++L IE L+ ++ L+ ++++ + + I +P ++AEFI QL+ RV+FR+A+++A++ ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC T YGVLG+K+W+F E Sbjct: 1 MGQKIHPLGFRIGITQKHRSSWFANSKDYPVLLQEDHKIRSFIHSKLSN--------ASIAKIEINRKVDQVEILIATARPGIVLGKSGAGIESLRKSLSLILD-PSKQLRVNVVEIADPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_RHDSA (30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina GN=rps3 PE=3 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 1.087e-48 Identity = 97/218 (44.50%), Postives = 150/218 (68.81%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQK++PLGFRL TQ+H S WFA KNY E L ED IRN++K + +SS GI+++EI ++ D +++ I+ P +++ I+ ++ +++K +N N +I I +T + N N++AEFIA QL+ R++FR+A ++AI+ ++A+ +GI+VQ++GRL+G EIAR+EW+REGRVPLQT+ A IDY + T YG LG+K+W+F EK Sbjct: 1 MGQKVHPLGFRLRITQTHRSSWFASSKNYPETLAEDYAIRNYVK------VNLSSA--GISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIIN-KNNQIRINVTELKNVDADANLIAEFIAQQLEKRIAFRRATRQAIQRAQRANVQGIKVQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYATKEADTTYGKLGVKVWVFNGEK 209
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MESVI (30S ribosomal protein S3, chloroplastic OS=Mesostigma viride GN=rps3 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.419e-48 Identity = 99/218 (45.41%), Postives = 143/218 (65.60%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758 MGQKI+PLGFRLG TQ H + WFAKP Y ++ED NYI+K + G+ARI+IQ++ D +++ IY P L++ + IE L ++Q +L RK I IT + P ++ EFIA +L+ R FR+A+++A++ ++A +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY +TIYG++GIK+WIF EK Sbjct: 1 MGQKIHPLGFRLGVTQEHRAHWFAKPSEYKFLVEED--------NYIRKYLNAKLANAGVARIDIQRKADQVEIEIYTARPGLVVGRTGKGIENLIRDLQDKLRN-KRKFRITITYLQEPDLESTLIGEFIAQRLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRADIDYSHCQAKTIYGIIGIKVWIFKGEK 209
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RS3_MICAN (30S ribosomal protein S3 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsC PE=3 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 7.044e-48 Identity = 98/217 (45.16%), Postives = 145/217 (66.82%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKI+PLGFRLG + H S W+A K Y E LQED++IR Y++KN+ + GIA I I+++ D + + I+ P +++ IE+L++ +QK L R+I I + + N++AE+IA QL+ RVSFR+ +++AI+ ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY T TIYG+LG+K+WIF E Sbjct: 1 MGQKIHPLGFRLGVIKDHKSCWYADAKRYPELLQEDRRIRQ----YVEKNLANA----GIADIRIERKADQVDISIHTARPGVVVGRGGTGIEQLRLGLQKALGG-QRQIRINVIEVARVDADANLIAEYIAQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYSYKTASTIYGILGVKVWIFKGE 208
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RS3_CYAP8 (30S ribosomal protein S3 OS=Cyanothece sp. (strain PCC 8801) GN=rpsC PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 7.788e-47 Identity = 95/217 (43.78%), Postives = 145/217 (66.82%), Query Frame = 3 Query: 105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755 MGQKI+P+GFRLG T H S W+A K Y E LQED++IR YI KN+ + GI+ I I+++ D + + I+ P +++ IE+L++ +Q++L NR+I I + + ++AE+I QL+ RVSFR+ +++AI+ ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY T +TIYG+LG+K+W+F E Sbjct: 1 MGQKIHPIGFRLGITADHKSCWYADSKRYPETLQEDRQIRQ----YITKNLSNA----GISDIRIERKADQVDLAIHTARPGVVVGRGGSGIEQLRLGLQQDLGG-NRQIRINVIEVQRVDADAMLIAEYITQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYAYRTAQTIYGILGVKVWVFKGE 208 The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bpback to top |