CX069434

Overview
NameCX069434
Unique NameCX069434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_STAPU (30S ribosomal protein S3, chloroplastic OS=Staurastrum punctulatum GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.601e-60
Identity = 117/219 (53.42%), Postives = 156/219 (71.23%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKEL-NCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELT-EQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKI+PLGFRLG TQSH S W  +P  Y E LQED+K+R  IK Y++K +R +    GI RIEIQ++   I+V I+ GFPKL +E    R++E++  +Q  L    + K  I++  +  PY    ILAE+IA Q++ RV+FRK +KKAI+L  EQ + KGI++QIAGRL+G EIAR+EW REGRVPLQT+ A+IDYC Y   TIYGVLGI++WIF ++
Sbjct:    1 MGQKIHPLGFRLGVTQSHLSNWCVQPSQYSELLQEDEKLRGCIKEYVRKYVRTAENYGGIDRIEIQRKTSAIKVEIHTGFPKLFVEKLGPRLKEIRREMQNTLQKSKHLKFIISLAEVEKPYAKATILAEYIAVQVERRVAFRKTIKKAIQLAKEQGNVKGIKIQIAGRLNGAEIARSEWAREGRVPLQTLRAQIDYCHYPAHTIYGVLGIRVWIFQEK 219          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PSINU (30S ribosomal protein S3, chloroplastic OS=Psilotum nudum GN=rps3 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.787e-59
Identity = 119/220 (54.09%), Postives = 162/220 (73.64%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKN-YCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTK-GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKI+PLGFRLGTTQ+H S WFA+ K  Y + ++ED++IRN I+ Y++K+        GIARIEI ++ DLI+V I++GF  LL EN   R E+L+ N++K +N  N+K+ + + +I  PY  P +LAE+IA QL+NRV FRKA+KKA+EL      K GI++QIAGRL+G EIAR EW REGRVPLQTI A I+Y  Y  +TIYG+LGIK+WI+ +++
Sbjct:    1 MGQKIHPLGFRLGTTQNHCSYWFAQSKKIYSKLVKEDKEIRNCIEKYVQKHTNNPFHYGGIARIEIYRKTDLIRVEIHMGFTDLLTENGGIRFEQLKSNIEKIVNSKNQKLCLILIKIDKPYTEPKVLAEYIALQLENRVVFRKAVKKALELAGNFKNKGGIKIQIAGRLNGIEIARVEWTREGRVPLQTIRAHINYYYYPAKTIYGILGIKVWIYQNDE 220          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHAGL (30S ribosomal protein S3, chloroplastic OS=Chaetosphaeridium globosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.581e-58
Identity = 121/252 (48.02%), Postives = 163/252 (64.68%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISS----GVEGIARIEIQKRIDLIQVIIYI-GFPKLLL-----------------------------ENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAI-ELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQK+NPLGFRLG TQ HHS WFA  K +   L+EDQKIR++I  Y++K+IR SS    G  G+++IEI++  +LI V I+  GFP LL+                             +N  + +E++   VQ+ L   N K  + +++++NPY   NI+AE+IA QL+NRV+FR+AMK+AI +  E    KGI++QI+GRL+G EIAR EW REGRVPLQT+ AKIDYC Y  +T YGVLGIK+WIF  E
Sbjct:    1 MGQKVNPLGFRLGVTQEHHSYWFATNKQFAGFLEEDQKIRHYIYQYVQKHIRESSNTSYGYSGVSKIEIKRDTELIHVEIHTSGFPALLIKGQIKEKNRDKNKSNKNSALDQSVNKNQNKNTGQELEKMWRYVQRSLTLSNGKFRMTLSKVSNPYKEANIVAEYIARQLENRVAFRRAMKQAIKDAKENGQVKGIKIQISGRLNGAEIARVEWAREGRVPLQTLRAKIDYCHYPAQTKYGVLGIKVWIFQGE 252          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_CHLAT (30S ribosomal protein S3, chloroplastic OS=Chlorokybus atmophyticus GN=rps3 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.762e-50
Identity = 102/218 (46.79%), Postives = 144/218 (66.06%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKI+PLGFRLG TQ H S WFAKP  Y + LQED  IRNF++  +           GIARI+IQ++ D +++ +    P L++    + +E L  ++Q++     R+  I IT I  P     ++AEFIA +L+ R  FR+AM++AI+   +A  +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY     +TIYG+LGIK+W+F  EK
Sbjct:    1 MGQKIHPLGFRLGITQDHRSHWFAKPAQYRQLLQEDNSIRNFLRTKLIN--------AGIARIDIQRKADQVEIEVRTARPGLIVGRSGKGVENLLRDLQEQFKN-KRRFRITITYIPEPDLESTLIAEFIAQRLEARAPFRRAMRQAIQRATRAGVEGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRANIDYSYCQAKTIYGILGIKVWMFKGEK 209          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PORPU (30S ribosomal protein S3, chloroplastic OS=Porphyra purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.860e-49
Identity = 97/217 (44.70%), Postives = 146/217 (67.28%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKI+PLGFR+G TQ H S WFA  K+Y   LQED KIR+FI   +            IA+IEI ++ D ++V+I    P ++L      IE L+ ++   L+  N++I + +  I++P     ++AEFI  QL+ RV+FR+A+++A++  ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC     T YGVLG+K+W+F  E
Sbjct:    1 MGQKIHPLGFRIGITQKHRSSWFASSKDYSVLLQEDHKIRSFIHGKLSN--------ASIAKIEINRKADQVEVLIATARPGIVLGKSGAGIESLRNSLTLILD-PNKQIRVNVVEISDPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_PORYE (30S ribosomal protein S3, chloroplastic OS=Porphyra yezoensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.321e-49
Identity = 94/217 (43.32%), Postives = 147/217 (67.74%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKI+PLGFR+G TQ H S WFA  K+Y   LQED KIR+FI + +            IA+IEI +++D ++++I    P ++L      IE L+ ++   L+  ++++ + +  I +P     ++AEFI  QL+ RV+FR+A+++A++  ++A+T+G+++Q++GRL+G EIAR+EW+REGRVPLQT+ A IDYC     T YGVLG+K+W+F  E
Sbjct:    1 MGQKIHPLGFRIGITQKHRSSWFANSKDYPVLLQEDHKIRSFIHSKLSN--------ASIAKIEINRKVDQVEILIATARPGIVLGKSGAGIESLRKSLSLILD-PSKQLRVNVVEIADPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGE 208          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_RHDSA (30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina GN=rps3 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.087e-48
Identity = 97/218 (44.50%), Postives = 150/218 (68.81%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQK++PLGFRL  TQ+H S WFA  KNY E L ED  IRN++K      + +SS   GI+++EI ++ D +++ I+   P +++      I+ ++ +++K +N  N +I I +T + N     N++AEFIA QL+ R++FR+A ++AI+  ++A+ +GI+VQ++GRL+G EIAR+EW+REGRVPLQT+ A IDY +    T YG LG+K+W+F  EK
Sbjct:    1 MGQKVHPLGFRLRITQTHRSSWFASSKNYPETLAEDYAIRNYVK------VNLSSA--GISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIIN-KNNQIRINVTELKNVDADANLIAEFIAQQLEKRIAFRRATRQAIQRAQRANVQGIKVQVSGRLNGAEIARSEWVREGRVPLQTLRADIDYATKEADTTYGKLGVKVWVFNGEK 209          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RR3_MESVI (30S ribosomal protein S3, chloroplastic OS=Mesostigma viride GN=rps3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.419e-48
Identity = 99/218 (45.41%), Postives = 143/218 (65.60%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 758
            MGQKI+PLGFRLG TQ H + WFAKP  Y   ++ED        NYI+K +       G+ARI+IQ++ D +++ IY   P L++    + IE L  ++Q +L    RK  I IT +  P     ++ EFIA +L+ R  FR+A+++A++  ++A  +GI++Q+AGRL+G EIAR+EW+REGRVPLQT+ A IDY     +TIYG++GIK+WIF  EK
Sbjct:    1 MGQKIHPLGFRLGVTQEHRAHWFAKPSEYKFLVEED--------NYIRKYLNAKLANAGVARIDIQRKADQVEIEIYTARPGLVVGRTGKGIENLIRDLQDKLRN-KRKFRITITYLQEPDLESTLIGEFIAQRLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVREGRVPLQTLRADIDYSHCQAKTIYGIIGIKVWIFKGEK 209          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RS3_MICAN (30S ribosomal protein S3 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.044e-48
Identity = 98/217 (45.16%), Postives = 145/217 (66.82%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKI+PLGFRLG  + H S W+A  K Y E LQED++IR     Y++KN+  +    GIA I I+++ D + + I+   P +++      IE+L++ +QK L    R+I I +  +       N++AE+IA QL+ RVSFR+ +++AI+  ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY   T  TIYG+LG+K+WIF  E
Sbjct:    1 MGQKIHPLGFRLGVIKDHKSCWYADAKRYPELLQEDRRIRQ----YVEKNLANA----GIADIRIERKADQVDISIHTARPGVVVGRGGTGIEQLRLGLQKALGG-QRQIRINVIEVARVDADANLIAEYIAQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYSYKTASTIYGILGVKVWIFKGE 208          
BLAST of CX069434 vs. ExPASy Swiss-Prot
Match: RS3_CYAP8 (30S ribosomal protein S3 OS=Cyanothece sp. (strain PCC 8801) GN=rpsC PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.788e-47
Identity = 95/217 (43.78%), Postives = 145/217 (66.82%), Query Frame = 3
Query:  105 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 755
            MGQKI+P+GFRLG T  H S W+A  K Y E LQED++IR     YI KN+  +    GI+ I I+++ D + + I+   P +++      IE+L++ +Q++L   NR+I I +  +        ++AE+I  QL+ RVSFR+ +++AI+  ++A+ KGI++Q++GRL+G EIAR EW+REGRVPL T+ A IDY   T +TIYG+LG+K+W+F  E
Sbjct:    1 MGQKIHPIGFRLGITADHKSCWYADSKRYPETLQEDRQIRQ----YITKNLSNA----GISDIRIERKADQVDLAIHTARPGVVVGRGGSGIEQLRLGLQQDLGG-NRQIRINVIEVQRVDADAMLIAEYITQQLERRVSFRRVVRQAIQRAQRAEVKGIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYAYRTAQTIYGILGVKVWVFKGE 208          
The following BLAST results are available for this feature:
BLAST of CX069434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_STAPU3.601e-6053.4230S ribosomal protein S3, chloroplastic OS=Stauras... [more]
RR3_PSINU1.787e-5954.0930S ribosomal protein S3, chloroplastic OS=Psilotu... [more]
RR3_CHAGL2.581e-5848.0230S ribosomal protein S3, chloroplastic OS=Chaetos... [more]
RR3_CHLAT5.762e-5046.7930S ribosomal protein S3, chloroplastic OS=Chlorok... [more]
RR3_PORPU2.860e-4944.7030S ribosomal protein S3, chloroplastic OS=Porphyr... [more]
RR3_PORYE8.321e-4943.3230S ribosomal protein S3, chloroplastic OS=Porphyr... [more]
RR3_RHDSA1.087e-4844.5030S ribosomal protein S3, chloroplastic OS=Rhodomo... [more]
RR3_MESVI1.419e-4845.4130S ribosomal protein S3, chloroplastic OS=Mesosti... [more]
RS3_MICAN7.044e-4845.1630S ribosomal protein S3 OS=Microcystis aeruginosa... [more]
RS3_CYAP87.788e-4743.7830S ribosomal protein S3 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D09-G18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069434 ID=CX069434; Name=CX069434; organism=Citrus sinensis; type=EST; length=857bp
GTACCGCGGCCCCCCCTCGAGTGCTCAAAAAACACTAGATTAATAAATAA
AAAAAAGAAAAAAAAAACTATGACATGTCATGATACATATAGGAATGGGG
GATTATGGGACAAAAAATAAATCCACTAGGTTTCCGGCTTGGTACAACAC
AAAGTCATCATTCTCTTTGGTTTGCAAAACCAAAAAACTATTGCGAGGGT
CTACAAGAAGATCAAAAAATACGAAACTTTATTAAGAATTATATAAAAAA
AAATATCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTC
AAAAAAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAA
TTATTACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGT
ACAAAAAGAACTTAATTGTGTGAATCGAAAAATAAACATTGCTATTACAC
GAATTACAAATCCTTATGGACACCCCAATATTCTTGCCGAATTTATAGCC
GGACAATTAAAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGCTAT
TGAATTAACGGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTGCAG
GGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAAGGT
AGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTATAC
GGTTCGAACTATCTACGGGGTATTGGGAATCAAAATTTGGATATTTGTAG
ACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAATGGA
AATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAAAAA
TGAGCCT
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