CX069408

Overview
NameCX069408
Unique NameCX069408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.100e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:  148 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.100e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:  148 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.100e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:  148 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.199e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:  142 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLY
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLY 115
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 357
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:  142 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 369
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLY
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLY 104
[Close]
BLAST of CX069408 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.311e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:  136 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 366
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98
The following BLAST results are available for this feature:
BLAST of CX069408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_TETTH1.100e-2986.49Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY1.100e-2986.49Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY1.100e-2986.49Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H4_ENTHI3.199e-2981.58Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H42_BLEJA3.537e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4_DICDI1.029e-2781.58Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN3.311e-2681.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10C06-E12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069408 ID=CX069408; Name=CX069408; organism=Citrus sinensis; type=EST; length=548bp
GGCACATTCAAATTTCTCTATCCAAATTCTCTTTCGAGGAACAGCGGAAA
GTCTTTTAAGTTCCTCGCTAAAATGTCTGGGCGCGGTAAGGGAGGCAAGG
GATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCGATAAC
ATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGAGGTGG
AGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTGA
AGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGAGCAC
GCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAG
GCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGTTCTG
GAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGATGGG
GCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAAGTTA
AATCTTATCTTTATATTTGAGGCAATATAGAACTGTTTTCTTTGAAAA
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