CX069374

Overview
NameCX069374
Unique NameCX069374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:231..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   85 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHM4B_HUMAN (Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   85 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   85 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   85 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHMP5_XENTR (Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   76 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS   G
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: SNF7_DEBHA (Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii GN=SNF7 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   88 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            NK  A   LKRK+ YE  + ++ N    +  Q+  +EGA    ET+ A++ GA  MK +    ++D V+ TMD+I EQ E   +I EA+S P+G
Sbjct:   56 NKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVG 149          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   76 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS   G
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154          
BLAST of CX069374 vs. ExPASy Swiss-Prot
Match: CHM4A_HUMAN (Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   64 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 369
            AK Y   KNKRAA+Q L+RK+ +EQQ+ Q       +  Q   +E A    E +  +   A +MK   +  +ID VD+ M +I EQ E  +QI +A+S P+G
Sbjct:   51 AKKYG-TKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151          
The following BLAST results are available for this feature:
BLAST of CX069374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CHM4B_MOUSE7.395e-1241.05Charged multivesicular body protein 4b OS=Mus musc... [more]
CHM4B_HUMAN7.395e-1241.05Charged multivesicular body protein 4b OS=Homo sap... [more]
CHM4B_XENTR9.659e-1240.00Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHM4B_XENLA9.659e-1240.00Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHMP5_XENTR1.261e-1136.73Charged multivesicular body protein 5 OS=Xenopus t... [more]
SNF7_DEBHA1.648e-1138.30Vacuolar-sorting protein SNF7 OS=Debaryomyces hans... [more]
CHMP5_XENLA2.152e-1136.73Charged multivesicular body protein 5 OS=Xenopus l... [more]
CHM4A_HUMAN2.152e-1138.24Charged multivesicular body protein 4a OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10A10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A10-A20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069374 ID=CX069374; Name=CX069374; organism=Citrus sinensis; type=EST; length=805bp
CTTGAAATGCTAGAGAAAAAGGAGAAAGTACTCCTGAAAAAGGCTTCTGT
AGAGGTTGAAAAGGCCAAGGACTACTCCAAAGCAAAGAACAAAAGAGCGG
CCATACAATGTTTGAAGAGGAAGAGGCTATACGAACAGCAAATAGAGCAG
CTTGGGAATTTCCAATTGCGCATTCATGATCAGATGATAATGCTAGAAGG
TGCTAAAGCCACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATCGA
CAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGTGGATAAGACC
ATGGATGAGATCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGC
ATTATCAACTCCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATTGG
AAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCTTCTA
CAGCCAGCTACAACAGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTGGCAG
GCAACAAGCCCGTCCTGTTCCCCAAAAGCAGCGAACAGCTGAGGAAGATG
AGCTTGCTGCTTTACAAGCTGAGATGGCTCTTTAAGCAGGTTTTACCGCC
ATAATGAAGATATTATTTAAATAGCTGGCCGTATAATGTGGAGATTTATG
CCTACTTGGATTACCTTCAAGATTTCTGTGTGCATTCAATGAACAGACTG
TATATAAAGTTTGCGTAAACTAGTCCTGTTTGAAATATGTATCCTGTATT
CTGTCTTATAGACCTTTTAATTGAGTTCATCATCTTTGATGTGTTTTTTC
CTTCT
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