CX069369

Overview
NameCX069369
Unique NameCX069369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069369 vs. ExPASy Swiss-Prot
Match: S22A2_MOUSE (Solute carrier family 22 member 2 OS=Mus musculus GN=Slc22a2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 50/166 (30.12%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   16 TTALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIF-VSESPRWL 510
            T   +I++E+ L C+ +++  L  +    G  +G V +  LAD   GRK  L ++ L  +++  L   S N     + RF  G+          +L+TE VG  +R  VGI     FT+G L L  +AY     +W  +    ++P   +  LLY + + ESPRWL
Sbjct:  130 TPGSSIVTEFNLVCAHSWMLDLFQSLVNVGFFIGAVGIGYLADR-FGRKFCLLVTILINAISGVLMAISPNYAWMLVFRFLQGLVSKAGWLIGYILITEFVGLGYRRTVGICYQIAFTVGLLILAGVAYA--LPNWRWLQFAVTLPNFCF--LLYFWCIPESPRWL 290          
BLAST of CX069369 vs. ExPASy Swiss-Prot
Match: S226B_XENLA (Solute carrier family 22 member 6-B OS=Xenopus laevis GN=slc22a6-B PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 1
Query:   22 ALTIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWL 510
            A TII++W L C+   ++ +  + +  G L+G +    L+D   GR+ L   S L M V      FS N   Y + RF +G++ + I   +  L  E + T  R        + +T+G L L  +A+  R   W  + L  SIP   Y  L   ++ ES RWL
Sbjct:  119 ASTIITQWDLVCNHRRMRQVAQSIYMAGVLVGSILFGGLSD-KFGRRPLNIWSNLQMFVTGICAAFSPNYIWYCIFRFLTGVAFSGIVLNSYSLTVEWIPTGNRAFTSTATGYCYTMGQLVLVGLAFIIRDWQW--LQLAASIPFFFYF-LYSWWIPESGRWL 277          
BLAST of CX069369 vs. ExPASy Swiss-Prot
Match: S22AC_HUMAN (Solute carrier family 22 member 12 OS=Homo sapiens GN=SLC22A12 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   28 TIISEWGLECSSAFIKGLPAASHFTGCLLGIVFLATLADSSLGRKNLLFLSCLTMSVATSLTIFSNNLWIYSLLRFFSGISRATIGTCTIVLLTEKVGTEWRGLVGILDSFFFTIGTLTLPAIAYTNRSSSWTIIYLWTSIPTLVYSGLLYIFVSESPRWL 510
            TI+++W L C S  +K +  + +  G L+G       +D   GR+ +L  S L M+V  +   F+    +Y L RF    + A +   T  LL E      R LV  L+S  F+ G     A+AY  R   WT++ L  S+P  +   L   +++ES RWL
Sbjct:  130 TIVAKWNLVCDSHALKPMAQSIYLAGILVGAAACGPASD-RFGRRLVLTWSYLQMAVMGTAAAFAPAFPVYCLFRFLLAFAVAGVMMNTGTLLMEWTAARARPLVMTLNSLGFSFGHGLTAAVAYGVR--DWTLLQLVVSVPFFL-CFLYSWWLAESARWL 286          
The following BLAST results are available for this feature:
BLAST of CX069369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
S22A2_MOUSE5.795e-1130.12Solute carrier family 22 member 2 OS=Mus musculus ... [more]
S226B_XENLA7.568e-1130.06Solute carrier family 22 member 6-B OS=Xenopus lae... [more]
S22AC_HUMAN9.885e-1131.06Solute carrier family 22 member 12 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10A08-A16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069369 ID=CX069369; Name=CX069369; organism=Citrus sinensis; type=EST; length=515bp
GATGGAAACCCTACTACTACTGCACTCACAATCATATCCGAATGGGGGCT
TGAATGTTCAAGTGCATTTATCAAAGGCCTGCCAGCAGCATCCCACTTCA
CAGGCTGTCTTCTCGGCATTGTTTTTCTGGCCACGCTCGCGGACTCATCT
CTCGGTCGTAAGAACTTGCTTTTCCTTTCGTGTTTAACGATGTCAGTAGC
AACATCCTTAACTATCTTCTCTAACAACCTCTGGATTTACTCCCTTCTGA
GATTCTTTAGTGGGATTAGCCGAGCCACGATTGGAACATGTACTATCGTG
TTACTAACGGAGAAAGTTGGGACAGAGTGGCGAGGCCTTGTCGGAATTTT
GGATTCCTTCTTCTTCACTATAGGTACATTAACATTGCCGGCAATTGCTT
ATACAAATCGAAGCTCTTCATGGACAATTATCTATTTATGGACTTCGATT
CCGACACTTGTCTACAGTGGGTTGCTTTATATTTTCGTTAGTGAGTCTCC
TAGATGGCTTTTCAT
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