DR403796 | Citrus Genome Database

Overview


Name	DR403796
Unique Name	DR403796
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	712

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.938e-21
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 3

Query:  312 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            ++ N++DA+YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G L
Sbjct:   66 SMENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYC-SSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTGIL 145

HSP 2 Score: 48.521 bits (114), Expect = 2.938e-21
Identity = 27/54 (50.00%), Postives = 32/54 (59.26%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D VKVG +   NQ F  +  E S+TFL A FDGILGL +  IS   A PV+
Sbjct:  145 LGYDTVKVGSIEDTNQIFGLSKTEPSLTFLFAPFDGILGLAYPSISSSDATPVF 198

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.821e-21
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S                    G   +IQYGTG+++G +
Sbjct:   71 LINYLDMEYFGTISIGTPPQNFTVIFDTGSSNLWVPSVYC-TSPACKAHPVFHPSQSDTYTEVGNHFSIQYGTGSLTGII 149

HSP 2 Score: 48.521 bits (114), Expect = 3.821e-21
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            +  D V V  L V  Q F E+ KE   TF+ A+FDGILGLG+  ++ G   PV+
Sbjct:  149 IGADQVSVEGLTVDGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVF 202

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.973e-21
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 3

Query:  312 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            +L N++DA+YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G L
Sbjct:   66 SLENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYC-SSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTGIL 145

HSP 2 Score: 46.9802 bits (110), Expect = 4.973e-21
Identity = 26/54 (48.15%), Postives = 31/54 (57.41%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D VKVG +   NQ F  +  E  +TFL A FDGILGL +  IS   A PV+
Sbjct:  145 LGYDTVKVGSIEDTNQIFGLSKTEPGLTFLFAPFDGILGLAYPSISSSDATPVF 198

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.094e-20
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS  C  S                    G S +IQYGTG+++G +
Sbjct:   66 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACQTHPVFHPSLSSTYREVGNSFSIQYGTGSLTGII 144

HSP 2 Score: 46.595 bits (109), Expect = 1.094e-20
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            +  D V V  L V  Q F E+ +E   TF+ A+FDGILGLG+  ++ G   PV+
Sbjct:  144 IGADQVSVEGLTVVGQQFGESVQEPGKTFVHAEFDGILGLGYPSLAAGGVTPVF 197

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.131e-20
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS  C  S                  + G S +IQYGTG++SG +
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGII 148

HSP 2 Score: 43.5134 bits (101), Expect = 3.131e-20
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 2

Query:  569 KVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            +V  L V  Q F E+  E   TF+ A+FDGILGLG+  +++G   PV+
Sbjct:  159 QVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVF 206

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.297e-20
Identity = 49/146 (33.56%), Postives = 72/146 (49.32%), Query Frame = 3

Query:  114 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVKRYNLHGGLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISG 548
            +FL+L+  A A     + RI L K+   +     G        +++  +K   + G + + D     L+++ +AQY+G V+IGTP Q F V+FDTGSSNLWVP A C F  +                   G S  IQYGTG++ G
Sbjct:    5 VFLLLALVALA---SAIQRIKLEKRTYTREQYKFG--------SIQEHLKAKYVPGYIPNKDAFNEGLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKG 139

HSP 2 Score: 44.669 bits (104), Expect = 5.297e-20
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 2

Query:  590 KNQDFIEATKEASITFLAAKFDGILGLGFQEISIGK 697
            KNQ    AT E  ITF+AAKFDGI G+G+  IS+ K
Sbjct:  158 KNQGLACATSEPGITFVAAKFDGIFGMGWDTISVNK 193

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.166e-19
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      S +I YGTG+++GFL
Sbjct:   67 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSAACSVHNQFNPEDSSTFQATSESLSITYGTGSMTGFL 145

HSP 2 Score: 41.5874 bits (96), Expect = 1.166e-19
Identity = 24/55 (43.64%), Postives = 29/55 (52.73%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            FL  D VKVG++   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  144 FLGYDTVKVGNIEDTNQIFGLSESEPGSFLYYAPFDGILGLAYPSISSSDATPVF 198

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.971e-19
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG +SIG+P Q FTVIFDT SSNLWVPS  C  S                    GT  +I YGTG+++G +
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYC-TSPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTGII 148

HSP 2 Score: 48.1358 bits (113), Expect = 1.971e-19
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            +  D V V  L V  Q F E+ KE   TF+ A+FDGILGLG+  ++ G   PV+
Sbjct:  148 IGADQVSVQGLTVVGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVF 201

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.338e-19
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3

Query:  321 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            ++MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GF
Sbjct:   67 DYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSASSTYSSNGQTFSLQYGSGSLTGF 142

HSP 2 Score: 39.6614 bits (91), Expect = 4.338e-19
Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S+G A
Sbjct:  142 FFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSMGGA 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.641e-19
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  CY S+                     + +I YGTG+++G L
Sbjct:   68 LENYLDVEYFGTIGIGTPAQNFTVVFDTGSSNLWVPSVYCY-SLACMDHNLFNPQDSSTYRATSKTVSITYGTGSMTGIL 146

HSP 2 Score: 38.5058 bits (88), Expect = 5.641e-19
Identity = 23/54 (42.59%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D VKVG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  146 LGYDTVKVGGISDTNQIFGLSETEPGFFLYFAPFDGILGLAYPSISSSGATPVF 199

The following BLAST results are available for this feature:

BLAST of DR403796 vs. ExPASy Swiss-Prot

BLAST of DR403796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
PEPA2_RABIT	2.938e-21	45.68	Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1	[more]
CATE_MOUSE	3.821e-21	47.50	Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1	[more]
PEPA4_RABIT	4.973e-21	46.91	Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1	[more]
CATE_CAVPO	1.094e-20	47.50	Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1	[more]
CATE_HUMAN	3.131e-20	48.75	Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2	[more]
ASP3_CAEEL	5.297e-20	33.56	Aspartic protease 3 OS=Caenorhabditis elegans GN=a...	[more]
PEPA3_RABIT	1.166e-19	47.50	Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1	[more]
CATE_RABIT	1.971e-19	45.00	Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ...	[more]
PEPC_CALJA	4.338e-19	48.05	Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1	[more]
PEPA4_MACFU	5.641e-19	45.00	Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAH-PNP1246E21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246E21 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403796 ID=DR403796; Name=DR403796; organism=Citrus sinensis; type=EST; length=712bp
GGGGGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTCTCTGTGCTCT
CTTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCGCAGCCATTCG
GGTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTCGCTTTGC
CAAATGATGGATTGGTGAGAATTGGGCTGAGAAAGAAGAAATTGGATCAG
ATCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAG
AACACCAGTCAAAAGATATAATCTCCATGGTGGTCTTGGAGATTCTGATA
CTGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAG
GTTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGG
AAGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTT
GCTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGG
AATGGGACATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTT
CTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCC
ATTCCAGTCTGG