DR403796 | Citrus Genome Database

Overview


Name	DR403796
Unique Name	DR403796
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	712

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.539e-19
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  324 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GF
Sbjct:   68 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGF 142

HSP 2 Score: 38.891 bits (89), Expect = 9.539e-19
Identity = 18/51 (35.29%), Postives = 29/51 (56.86%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S+ +A
Sbjct:  142 FFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEA 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.240e-18
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 3

Query:  321 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +++DA YFGE+SIGTPSQ F V+FDTGSSNLWVPS  C                      + T  +++YG+G+++GF
Sbjct:   67 DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQSEACTTHNRFNPSKSSTFYTYDQT-FSLEYGSGSLTGF 142

HSP 2 Score: 43.5134 bits (101), Expect = 1.240e-18
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIP 706
            F   D   + ++ V NQ+F  +  E    FL A+FDGI+GL +  +S+G A P
Sbjct:  142 FFGYDTFTIQNIEVPNQEFGLSETEPGTNFLYAEFDGIMGLAYPSLSVGDATP 194

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.615e-18
Identity = 39/80 (48.75%), Postives = 46/80 (57.50%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            + N+MDA Y+G +SIGTP Q F+VIFDTGSSNLWVPS  C  S                   N T   I YGTG++SG L
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSACSNHKRFDPSKSSTYVSTNET-VYIAYGTGSMSGIL 129

HSP 2 Score: 38.891 bits (89), Expect = 1.615e-18
Identity = 23/54 (42.59%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V V  + V+NQ F  +  E    F    FDGILGL F  IS   A PV+
Sbjct:  129 LGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAFPSISSSGATPVF 182

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.099e-18
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  324 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GF
Sbjct:   57 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGF 131

HSP 2 Score: 37.7354 bits (86), Expect = 2.099e-18
Identity = 18/51 (35.29%), Postives = 28/51 (54.90%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S+  A
Sbjct:  131 FFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPTLSVDGA 181

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.727e-18
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  324 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GF
Sbjct:   68 YMDASYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTGHARFNPNQSSTYSTNGQTFSLQYGSGSLTGF 142

HSP 2 Score: 36.965 bits (84), Expect = 2.727e-18
Identity = 16/51 (31.37%), Postives = 30/51 (58.82%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V ++ V +Q+F  +  E    F+ A+FDGI+G+ +  +++G A
Sbjct:  142 FFGYDTMTVQNIKVPHQEFGLSQNEPGTNFIYAQFDGIMGMAYPSLAMGGA 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.546e-18
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  324 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  +                   NG + ++QYG+G+++GF
Sbjct:   68 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-TQACTGHTRFNPSQSSTYSTNGQTFSLQYGSGSLTGF 142

HSP 2 Score: 38.1206 bits (87), Expect = 3.546e-18
Identity = 17/51 (33.33%), Postives = 29/51 (56.86%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V  + V NQ+F  +  E    F+ A+FDGI+G+ +  +++G A
Sbjct:  142 FFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGMAYPSLAMGGA 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.547e-18
Identity = 56/144 (38.89%), Postives = 73/144 (50.69%), Query Frame = 3

Query:  135 AAFALPN-DGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVKRYNLHGGLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            A FAL    G+VRI L K K   + R +     KE   +   +K +        S++  VA   L N++D QYFG++ IGTP Q FTV+FDTGSS+LWVPS  C  SV                     S +IQYGTG++ G L
Sbjct:    9 AVFALSQASGIVRIPLHKGK--SLRRAL-----KERGLLEDFLKNHQHAVSRKHSNSREVASEFLTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLL 144

HSP 2 Score: 35.039 bits (79), Expect = 3.547e-18
Identity = 18/54 (33.33%), Postives = 30/54 (55.56%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V V  +V  +Q    +T+E    F  ++FDGILGL +  ++   ++PV+
Sbjct:  144 LGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAYPSLASEYSVPVF 197

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.610e-18
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 3

Query:  117 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVKRYNLHGGLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +++++     L    L+R+ LRK K  +   +  Q V K+  +     P ++Y+  G  GD    +     +MDA YFGE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GF
Sbjct:    3 WMVVALLCLPLLEASLLRVPLRKMKSIR-ETMKEQGVLKDFLKTHKYDPGQKYHF-GNFGDYSV-LYEPMAYMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTGSLTGF 145

HSP 2 Score: 38.1206 bits (87), Expect = 4.610e-18
Identity = 19/51 (37.25%), Postives = 28/51 (54.90%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S G A
Sbjct:  145 FFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGA 195

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.615e-18
Identity = 52/134 (38.81%), Postives = 70/134 (52.24%), Query Frame = 3

Query:  162 LVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVKRYNLHGGLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            +V+I L KKK  + N +      K +E MRT   +YNL          +V+   L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G L
Sbjct:    3 VVKIPLVKKKSLRQNLIEN---GKLKEFMRT--HKYNLGSKYIREAATLVSEQPLQNYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSIYC-SSEACTNHNRFNPQDSSTYEATSETLSITYGTGSMTGIL 130

HSP 2 Score: 36.1946 bits (82), Expect = 4.615e-18
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  130 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 183

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.793e-18
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 3

Query:  117 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVKRYNLHGGLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            +++++     L    L+R+ L+K K  +   +  Q V K+  +     P ++Y+  G  GD    +     +MDA Y+GE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GF
Sbjct:    3 WMVVALLCLPLLEAALIRVPLKKMKSIR-ETMKEQGVLKDFLKNHKYDPGQKYHF-GKFGDYSV-LYEPMAYMDASYYGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGSLTGF 145

HSP 2 Score: 39.2762 bits (90), Expect = 7.793e-18
Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D ++V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S G A
Sbjct:  145 FFGYDTLRVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGA 195

The following BLAST results are available for this feature:

BLAST of DR403796 vs. ExPASy Swiss-Prot

BLAST of DR403796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
PEPC_HUMAN	9.539e-19	48.68	Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1	[more]
PEPC_RABIT	1.240e-18	44.16	Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV...	[more]
PEPA_CHICK	1.615e-18	48.75	Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1	[more]
PEPC_MACFU	2.099e-18	48.68	Gastricsin (Fragment) OS=Macaca fuscata fuscata GN...	[more]
PEPC_SUNMU	2.727e-18	48.68	Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2	[more]
PEPC_RHIFE	3.546e-18	47.37	Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=...	[more]
CHYM_CALJA	3.547e-18	38.89	Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1	[more]
PEPC_RAT	4.610e-18	34.69	Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1	[more]
PEPA_BOVIN	4.615e-18	38.81	Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2	[more]
PEPC_MOUSE	7.793e-18	33.33	Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAH-PNP1246E21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246E21 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403796 ID=DR403796; Name=DR403796; organism=Citrus sinensis; type=EST; length=712bp
GGGGGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTCTCTGTGCTCT
CTTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCGCAGCCATTCG
GGTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTCGCTTTGC
CAAATGATGGATTGGTGAGAATTGGGCTGAGAAAGAAGAAATTGGATCAG
ATCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAG
AACACCAGTCAAAAGATATAATCTCCATGGTGGTCTTGGAGATTCTGATA
CTGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAG
GTTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGG
AAGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTT
GCTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGG
AATGGGACATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTT
CTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCC
ATTCCAGTCTGG