DR403796 | Citrus Genome Database

Overview


Name	DR403796
Unique Name	DR403796
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	712

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.713e-17
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C                      +GT  +I YGTG+++G L
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACTNHNLFNPQDSSTYQSTSGT-LSITYGTGSMTGIL 146

HSP 2 Score: 36.1946 bits (82), Expect = 1.713e-17
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  146 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 199

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.713e-17
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C                      +GT  +I YGTG+++G L
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACTNHNRFNPQDSSTYQSTSGT-VSITYGTGSMTGIL 146

HSP 2 Score: 36.1946 bits (82), Expect = 1.713e-17
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  146 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 199

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.713e-17
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C                      +GT  +I YGTG+++G L
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACTNHNLFNPQDSSTYQSTSGT-LSITYGTGSMTGIL 146

HSP 2 Score: 36.1946 bits (82), Expect = 1.713e-17
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  146 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 199

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.713e-17
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 3

Query:  312 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            +L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C                      N    +I YGTG+++G L
Sbjct:   65 SLKNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYCSSPACSNHNRFNPQESSTYQGTN-RPVSIAYGTGSMTGIL 144

HSP 2 Score: 38.1206 bits (87), Expect = 1.713e-17
Identity = 22/54 (40.74%), Postives = 28/54 (51.85%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL + +IS   A PV+
Sbjct:  144 LGYDTVQVGGIADTNQIFGLSETEPGSFLYYAPFDGILGLAYPQISASGATPVF 197

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.757e-17
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFLAR 560
            L N++D  Y G +SIGTP Q F+V+FDTGSS+LWVPS  C                     R G S  ++YG+G +SGFL +
Sbjct:   68 LRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCKSKACVTHRSFNPSHSSTFHDR-GKSIKLEYGSGKMSGFLGQ 148

HSP 2 Score: 39.6614 bits (91), Expect = 3.757e-17
Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISI 691
            FL QD V++G L    Q F  + +E    F  A FDGILGL +  I+I
Sbjct:  145 FLGQDTVRIGQLTSTGQAFGLSKEETGKAFEHAIFDGILGLAYPSIAI 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.765e-17
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+                       +I YGTG+++G L
Sbjct:   65 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGIL 143

HSP 2 Score: 36.5798 bits (83), Expect = 3.765e-17
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  143 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVF 196

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.893e-17
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  324 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGF 551
            ++DA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GF
Sbjct:   68 YLDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTGHARFNPSKSSTYSTNGQTFSLQYGSGSLTGF 142

HSP 2 Score: 34.2686 bits (77), Expect = 4.893e-17
Identity = 15/51 (29.41%), Postives = 30/51 (58.82%), Query Frame = 2

Query:  548 FLSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKA 700
            F   D + + ++ V +Q+F  +  E    F+ A+FDGI+G+ +  +++G A
Sbjct:  142 FFGYDTMTLQNIKVPHQEFGLSQNEPGENFVYAQFDGIMGMAYPTLAMGGA 192

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.893e-17
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  C  S+                     + +I YGTG+++G L
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYC-SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGIL 146

HSP 2 Score: 36.1946 bits (82), Expect = 4.893e-17
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+
Sbjct:  146 LGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVF 199

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.895e-17
Identity = 54/149 (36.24%), Postives = 72/149 (48.32%), Query Frame = 3

Query:  120 LILSPAAFALPNDGLVRIGL-RKKKLDQINRLVGQTVSKEEETMRTPVKRYNLHGGLGDSDTDIVA-----LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISG 548
            L L  A  AL +DG+ R+ L R KKL +I R  G      +        RY++      +  D++      L N +D +Y+G +SIGTP Q FTV+FDTGSSNLWVPS  C  S                    G + +I YGTG + G
Sbjct:    4 LALLCAVLAL-SDGITRLPLERGKKLREILREKGLLHHFLQH------HRYDIGTKFPHAFPDVLTVVTEPLLNTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWVPSVSC-TSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTGDMEG 144

HSP 2 Score: 38.5058 bits (88), Expect = 4.895e-17
Identity = 21/51 (41.18%), Postives = 28/51 (54.90%), Query Frame = 2

Query:  560 DNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            D V V  L+  NQ F  +T E    F+  KFDGILGLG+  ++     PV+
Sbjct:  149 DTVTVASLMDTNQLFGLSTSEPGQFFVYVKFDGILGLGYPSLAADGITPVF 199

[Close]

BLAST of DR403796 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.397e-16
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 3

Query:  315 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFL 554
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C                      N    ++ YGTG+++G L
Sbjct:   66 LENYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYCSSPACSNHNRFNPQQSSTYQGTN-QKLSVAYGTGSMTGIL 144

HSP 2 Score: 35.8094 bits (81), Expect = 1.397e-16
Identity = 21/54 (38.89%), Postives = 27/54 (50.00%), Query Frame = 2

Query:  551 LSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L  D V+VG +   NQ F  +  E       A FDGILGL +  I+   A PV+
Sbjct:  144 LGYDTVQVGGITDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIASSGATPVF 197

The following BLAST results are available for this feature:

BLAST of DR403796 vs. ExPASy Swiss-Prot

BLAST of DR403796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
PEPA_MACMU	1.713e-17	46.25	Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1	[more]
PEPA2_MACFU	1.713e-17	46.25	Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1	[more]
PEPA1_MACFU	1.713e-17	46.25	Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S...	[more]
PEPA_CANFA	1.713e-17	45.68	Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1	[more]
PAG2_PIG	3.757e-17	42.68	Pregnancy-associated glycoprotein 2 OS=Sus scrofa ...	[more]
PEPA_PIG	3.765e-17	45.00	Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3	[more]
PEPC_SORUN	4.893e-17	47.37	Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1	[more]
PEPA_HUMAN	4.893e-17	43.75	Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1	[more]
PEPE_CHICK	4.895e-17	36.24	Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1	[more]
PEPA_RHIFE	1.397e-16	45.00	Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAH-PNP1246E21 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246E21 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403796 ID=DR403796; Name=DR403796; organism=Citrus sinensis; type=EST; length=712bp
GGGGGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTCTCTGTGCTCT
CTTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCGCAGCCATTCG
GGTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTCGCTTTGC
CAAATGATGGATTGGTGAGAATTGGGCTGAGAAAGAAGAAATTGGATCAG
ATCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAG
AACACCAGTCAAAAGATATAATCTCCATGGTGGTCTTGGAGATTCTGATA
CTGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAG
GTTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGG
AAGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTT
GCTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGG
AATGGGACATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTT
CTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCC
ATTCCAGTCTGG