CX054048

Overview
NameCX054048
Unique NameCX054048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.590e-16
Identity = 59/225 (26.22%), Postives = 99/225 (44.00%), Query Frame = 1
Query:   94 NVQALASNSKEIPSRYIRPELDDEQVLADGS-LHIPVIDMSKLQDDDDDELAE----FHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDML-FLLTQPANIRTTSLWPTIPTSLRATIE-------EYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD 729
            + + L  +S  IP +++ P  D E+   D   L +P+ID++     D    +E       A    GF  + NHGV E ++ +    ++ FFK P  EK    +      GY  +FV     KL W + L F  +    I + ++   +   +    E       EY+  +  +++ +++L+  +LG+E       FED     R+NYYP C Q    +G  PH D
Sbjct:   26 DAKLLNQHSHHIPQQFVWP--DHEKPSTDVQPLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCD 248          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.607e-16
Identity = 62/214 (28.97%), Postives = 100/214 (46.73%), Query Frame = 1
Query:  121 KEIPSRYIRPELDDEQVLADGSL-----HIPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGI--EPGKLASLFED---GIQGIRMNYYPPCAQANRVIGLTPHSDS 732
            +E+P  Y     DD    A  S      +IP+ID+     D  D   +   AC+  G  Q+ NHGVP  +++ ++      F LP++ K+  A+    + GYG A + S   K  W +   +   P N     LWP    +    +EEY   ++K+   L+ L   +LG+  E  + ASL  D       +++N+YP C + +R +GL  H+DS
Sbjct:   28 RELPDSYKWTPKDDLLFSAAPSPPATGENIPLIDL-----DHPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLN-DFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDS 235          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.271e-15
Identity = 54/211 (25.59%), Postives = 99/211 (46.92%), Query Frame = 1
Query:  190 HIPVIDMSKLQDDDDDELAEFHL-ACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            + P+I++ KL   + D   E    AC++ GF +L+NHG+P +V++ ++   +  +K  +E++         +   G   V ++   LDW    FL   P  +   S  P +    R  + +++  L+K+   LL L+ +NLG+E G L   F   +    G +++ YPPC + + + GL  H+D+                  K G+W+ V
Sbjct:    3 NFPIINLEKLNGSERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQR-----FKELVASKGLEAVQAEVTDLDWESTFFLRHLP--VSNISEVPDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDV 206          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.272e-15
Identity = 51/185 (27.57%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  190 HIPVIDMSKLQDDDDDELAEFHL-ACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDS 732
            + P++DM KL  +D     E    AC++ GF + +NHG+  ++++ ++   +E +K  +E++         +   G   V S+   LDW    FL   P  + + S  P +    R  ++E++L+L+++   LL L+ +NLG+E G L   F   +    G +++ YPPC +   + GL  H+D+
Sbjct:    3 NFPIVDMGKLNTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQR-----FKEMVATKGLECVQSEIDDLDWESTFFLRHLP--VSSISEIPDLDDDYRKVMKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDA 180          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.579e-15
Identity = 57/214 (26.64%), Postives = 94/214 (43.93%), Query Frame = 1
Query:  193 IPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLG--IEPGKLASLFED-----GIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPVK 813
            IPVID+S     + D       A K  G  Q+ NHG+ +K+++ +++  +  F +P E K+  A     + GYG+  +    +K  W +   +          +LWP   T     I+EY  E++K+   LL  +  +LG  +E  + A   E      G   IR+N+YP C +  R +GL  H+DS                 ++   WV V+
Sbjct:   49 IPVIDLS-----NPDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTVE 257          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.287e-15
Identity = 65/222 (29.28%), Postives = 100/222 (45.05%), Query Frame = 1
Query:  118 SKEIPSRYIRPELDDEQVLADGSLH------IPVIDMSKLQDDDDDELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRT--TSLWPTIPTSLR---ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLAS------LFEDGIQGIRMNYYPPCAQANRVIGLTPHSDS 732
            ++ +P  +  P L D  V+ DGS        +PV+DM      D        LA +D G   L+ HGVP  ++ +++  I   F LP  EKM   + P    GYG   + S   K  W +       PAN+R+    LWP      R   A +EE+  E++ +   LL+L    LG+   ++A+      + E     + +N+YP C    R +GL  H+DS
Sbjct:   19 ARRVPETHAWPGLHDHPVV-DGSGAGGEPDAVPVVDMR-----DPFAAEAVGLAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTF--SPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDS 232          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.287e-15
Identity = 53/209 (25.36%), Postives = 104/209 (49.76%), Query Frame = 1
Query:  196 PVIDMSKLQDDDDD-ELAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQ---GIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            P+I++ KL  ++    + +   AC++ GF + +NHG+  ++++K++   +E +K  +EE+        SI+  G   + S+   +DW    +L   P  +   S  P +    R  +++++ +++K++  LL L+ +NLG+E G L  +F    +   G +++ YPPC   + V GL  H+D+                  K G+WV V
Sbjct:    5 PIINLEKLNGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEER-----FKESIKNRGLDSLRSEVNDVDWESTFYLKHLP--VSNISDVPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDV 206          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 55/209 (26.32%), Postives = 98/209 (46.89%), Query Frame = 1
Query:  196 PVIDMSKLQDDDDDELAE-FHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            PVIDM KL  ++     E    AC++ GF +L+NHG+  ++++ ++   +E +   +E++         +   G   V S+   LDW    FL   P  +   S  P +    R  ++E++ +L+K+   LL L+ +N+G+E G L   F   +    G +++ YPPC +   + GL  H+D+                  K G+W+ V
Sbjct:    5 PVIDMEKLNGEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQR-----FKEMVATKGLEAVQSEINDLDWESTFFLRHLP--VSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDV 206          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 56/213 (26.29%), Postives = 105/213 (49.30%), Query Frame = 1
Query:  196 PVIDMSKLQDDDDDE-LAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMA--CAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQ--GIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            PVI+M  LQ       +A    AC++ G  +L+NHG+  +++ +++T  +E ++   E++     ++  +++E         + + LDW    FL   P +    S  P +    R+T++E++LEL+ +   LL L+ ++LG+E G L  +F    DG+   G +++ YPPC +   + GL  H+D+                  K G+W+ V
Sbjct:    7 PVINMELLQGSQRPAAMALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLDTVENV-------EPENLDWESTFFLRHLPTS--NISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDV 210          
BLAST of CX054048 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 51/214 (23.83%), Postives = 105/214 (49.07%), Query Frame = 1
Query:  184 SLHIPVIDMSKLQDDDDDE-LAEFHLACKDSGFLQLINHGVPEKVIEKMKTDIEEFFKLPLEEKMACAQLPNSIEGYGQAFVVSKDQKLDWGDMLFLLTQP-ANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXXKKYGKWVPV 810
            ++  PV+D+SKL  ++ D+ +A  + AC++ GF +++NHG+P  +++  +   +E +K+ +E+K       + ++  G   +  + + +DW    +L   P +N+      P +    R  ++++   L+ +   LL L+ +NLG+E G L  +F   +    G +++ YP C +   + GL  H+D+                  K G W+ V
Sbjct:    4 NIKFPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQK-----FNDMLKSKGLENLEREVEDVDWESTFYLRHLPQSNLYDI---PDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDV 209          
The following BLAST results are available for this feature:
BLAST of CX054048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
GAOX3_ARATH6.590e-1626.22Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
G3OX1_ARATH8.607e-1628.97Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO3_PETHY3.271e-1525.591-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO_PEA4.272e-1527.571-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
G3OX4_ARATH5.579e-1526.64Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3O23_WHEAT7.287e-1529.28Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
ACCO1_ARATH7.287e-1525.361-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO_ACTDE9.517e-1526.321-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO1_DORSP9.517e-1526.291-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO1_BRAJU9.517e-1523.831-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054048 ID=CX054048; Name=CX054048; organism=Citrus sinensis; type=EST; length=815bp
AAAAGCTAGGAGAATAATACCCCAAAAGAGAGTTGCGAAATGGAAACTGC
AGTTGACAAGAAAAATGTCTACGGCGGTTCTTTACCTGTAGAAAATGTTC
AAGCTCTTGCATCTAATTCCAAGGAAATCCCATCCCGGTACATCCGACCA
GAACTTGATGATGAGCAAGTTCTCGCTGATGGATCACTTCATATTCCAGT
GATTGATATGAGCAAGCTTCAGGACGATGATGATGATGAATTGGCAGAGT
TCCATTTGGCTTGCAAAGACTCGGGCTTCCTCCAGTTGATCAATCACGGG
GTACCAGAAAAAGTAATTGAGAAGATGAAAACTGACATTGAGGAATTCTT
TAAGCTGCCATTAGAGGAGAAGATGGCTTGCGCACAGCTGCCAAATAGCA
TTGAAGGTTATGGGCAAGCTTTCGTTGTCTCCAAGGATCAAAAGCTTGAT
TGGGGAGACATGCTTTTTCTTCTTACTCAACCTGCCAATATTAGAACCAC
GAGTCTCTGGCCTACCATCCCTACTTCTTTAAGAGCAACCATAGAGGAAT
ACTCTTTGGAACTGCAAAAGGTTACAATCTTTCTGTTGAAGTTGATGGCT
AAGAATTTGGGGATTGAACCTGGGAAACTTGCAAGCTTGTTTGAAGATGG
TATACAAGGAATAAGAATGAATTATTATCCACCATGTGCCCAGGCCAACA
GGGTTATTGGTCTCACTCCACACTCTGACTCTGTTGCATTAACATTGTTG
GTTCAAGTGAACCAAGTACAAGGTTTACAGGTAAAGAAATATGGCAAGTG
GGTACCAGTCAAACC
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