CX054047

Overview
NameCX054047
Unique NameCX054047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.597e-21
Identity = 64/226 (28.32%), Postives = 103/226 (45.58%), Query Frame = -2
Query:  220 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFED-------GIQG-IRMNYYPPCAQANRVIGLTPHSDS---VAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLVVT 864
            GYG   +     KL W +   ++        T LWP         +EEY   +  ++  L+ ++  +LG+    L  L  D        IQ  +++N YP C   +  +GL PH+DS                    ++  +W+ V+PI G+ ++ +GD+  I+SNG+++S  HRAVVN    R+S A F  P  N  IGPL +      IY+ +  EE++    T
Sbjct:  113 GYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTSDKNHPPIYRRLIWEEYLAAKAT 338          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 60/218 (27.52%), Postives = 107/218 (49.08%), Query Frame = -2
Query:  202 LDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPE-KERLSVAAFHSPNMNTTIGPLPNSV------EDRAIYKNITHEEFIKLVVTSKLDGK 825
            +DW    FL   P +    S    +    +  ++E++ +L+ +   LL L+ +NLG+E G L   F   +    G +++ YPPC + + + GL  H+D+                + K G W+ V P+  A ++N+GD +E+++NG YKS+ HR +       R+S+A+F++P  +  I P P  V      E + +Y     E+++KL +  K   K
Sbjct:   84 MDWESTFFLRHLPES--NISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLEVITNGRYKSVMHRVLTQTSGTGRMSIASFYNPGSDAVIYPAPALVEKDQDEEKKEVYPKFVFEDYMKLYLGVKFQAK 299          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.870e-21
Identity = 57/215 (26.51%), Postives = 105/215 (48.84%), Query Frame = -2
Query:  202 QKLDWGDMLFLLTQPANIRTTSLW--PTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLF---EDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRAIYKNITHEEFIKLVVTSKLDGK 831
            + +DW    +L   P +    +L+  P +    R  ++++   L+ +   LL L+ +NLG+E G L  +F   +    G +++ YP C +   + GL  H+D+                + K G W+ V P+  + +IN+GD +E+++NG YKS+ HR V   E  R+S+A+F++P  +  I P  +       Y +   ++++KL    K   K
Sbjct:   85 EDVDWESTFYLRHLPQS----NLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKETEYPSFVFDDYMKLYAGVKFQPK 295          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.684e-20
Identity = 69/243 (28.40%), Postives = 118/243 (48.56%), Query Frame = -2
Query:  178 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTT--SLWPTIPTSLR---ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLAS------LFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYG--KWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDR-AIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 864
            GYG   + S   K  W +       PAN+R+    LWP      R   A +EE+  E++ +   LL+L    LG+   ++A+      + E     + +N+YP C    R +GL  H+DS                + ++G  +WV V  +PGA ++N+GD+ +I++NG + S+ HRAVVN E +R+S+  F  P  +  + PL  ++    A Y+ +T  E++ +   +   G + L  V +
Sbjct:  115 GYGSPPISSFFSKCMWSEGYTF--SPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDS-GFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20
Identity = 67/234 (28.63%), Postives = 111/234 (47.44%), Query Frame = -2
Query:  178 YGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSD-SVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNT---TIGPLPN--SVEDRAIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 861
            Y   F +      +W D L   T P   R   L    P +    + EYS E+ K+   L +L+++ LG+    L  +       +  +YYPPC Q +  +GLT HSD S                  +Y  WV V P+PGA ++N+GD++++++N ++ S+EHR + N    R+SVA F S  +       GP+    S E+   Y++ T  E+ K   +   DG + L ++++
Sbjct:  138 YSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDL----PATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQY--WVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.751e-20
Identity = 68/243 (27.98%), Postives = 118/243 (48.56%), Query Frame = -2
Query:  178 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTT--SLWPTIPTSLR---ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLAS------LFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYG--KWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDR-AIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 864
            GYG   + S   K  W +       PAN+R+    LWP      R   A +EE+  E++ +   LL+L    LG+   ++A+      + E     + +N+YP C    R +GL  H+DS                + ++G  +WV V  +PGA ++N+GD+ +I++NG + S+ HRAVVN + +R+S+  F  P  +  + PL  ++    A Y+ +T  E++ +   +   G + L  V +
Sbjct:  115 GYGSPPISSFFSKCMWSEGYTF--SPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDS-GFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.751e-20
Identity = 68/243 (27.98%), Postives = 118/243 (48.56%), Query Frame = -2
Query:  178 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTT--SLWPTIPTSLR---ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLAS------LFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYG--KWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDR-AIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 864
            GYG   + S   K  W +       PAN+R+    LWP      R   A +EE+  E++ +   LL+L    LG+   ++A+      + E     + +N+YP C    R +GL  H+DS                + ++G  +WV V  +PGA ++N+GD+ +I++NG + S+ HRAVVN + +R+S+  F  P  +  + PL  ++    A Y+ +T  E++ +   +   G + L  V +
Sbjct:  115 GYGSPPISSFFSKCMWSEGYTF--SPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDS-GFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAGTPAAYRAVTWPEYMGVRKKAFTTGASALKMVAI 354          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.431e-19
Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = -2
Query:  295 GYGQAFVVSKDQKLDWGDML-FLLTQPANIRTTSLWPTIPTSLRATIE-------EYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGP 864
            GY  +FV     KL W + L F  +    I + ++   +   +    E       EY+  +  +++ +++L+  +LG+E       FED     R+NYYP C Q    +G  PH D  +                   KW  + P P AF++NIGD    ++NG YKS  HRAVVN E+ER + A F  P     + P
Sbjct:  133 GYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVD-NKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKP 329          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.431e-19
Identity = 59/204 (28.92%), Postives = 99/204 (48.53%), Query Frame = -2
Query:  268 GYGQAFVVSKDQKLDWGDMLFLLTQPAN--IRTTSLWPTIPTSLRATIEEYSL---ELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRA 864
            GY  +F      KL W + L   + P++  +    +  T+    R   E Y+    E+ ++++ +++++ ++LG+        FE     +R+NYYPPC +    +G  PH D  +                + G+W  ++P   AF++NIGD    +SNG YKS  HRAVVN +  R S+A F  P M+  + P P ++ D A
Sbjct:  114 GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTE-GRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAP-PGTLVDAA 315          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.147e-19
Identity = 59/204 (28.92%), Postives = 98/204 (48.04%), Query Frame = -2
Query:  268 GYGQAFVVSKDQKLDWGDMLFLLTQPAN--IRTTSLWPTIPTSLRATIEEYSL---ELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDRA 864
            GY  +F      KL W + L   + P++  +    +  T+    R   E Y+    E+ ++++ +++++ ++LG+        FE     +R+NYYPPC +    +G  PH D  +                + G+W  ++P   AF++NIGD    +SNG YKS  HRAVVN    R S+A F  P M+  + P P ++ D A
Sbjct:  114 GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTE-GRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP-PGTLVDAA 315          
The following BLAST results are available for this feature:
BLAST of CX054047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G3OX3_ARATH2.597e-2128.32Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO1_CUCME3.392e-2127.521-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO1_BRAJU9.870e-2126.511-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
G3O23_WHEAT1.684e-2028.40Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
ACCH1_ARATH2.872e-2028.631-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3O22_WHEAT3.751e-2027.98Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT3.751e-2027.98Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
GAOX3_ARATH2.431e-1929.80Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAO1B_WHEAT2.431e-1928.92Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1D_WHEAT4.147e-1928.92Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054047 ID=CX054047; Name=CX054047; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTTTTTTTTTGATGAATAGAAATTAGATTATGAGTAAAATCTT
TTCTTGCCATTGCACAACTCAGTAAGCAGACAAAAGCGCTTAGAGGTTTA
ATCTGTAACTGGCATTAGATGGCATAGCATTTTTAAGGGGCACACTCTTG
GTGAAATTCTCTGACCATTTATGGCTCAAGTCTCACATGACTCAATAGGT
TCTTACCATCAAGTTTGCTGGTTACAACGAGCTTTATAAATTCTTCGTGT
GTTATATTCTTGTAAATTGCTCTGTCCTCCACGGAATTTGGTAAAGGACC
AATAGTAGTATTCATGTTTGGACTGTGAAATGCTGCTACCGAAAGGCGTT
CCTTTTCTGGATTCACAACAGCTCTGTGCTCTATGCTCTTGTATTCTCCA
TTGCTCATTATCTCAATGATGTCTCCAATATTGATAATGAATGCACCTGG
GATTGGTTTGACTGGTACCCACTTGCCATATTTCTTTACCTGTAAACCTT
GTACTTGGTTCACTTGAACCAACAATGTTAATGCAACAGAGTCAGAGTGT
GGAGTGAGACCAATAACCCTGTTGGCCTGGGCACATGGTGGATAATAATT
CATTCTTATTCCTTGTATACCATCTTCAAACAAGCTTGCAAGTTTCCCAG
GTTCAATCCCCAAATTCTTAGCCATCAACTTCAACAGAAAGATTGTAACC
TTTTGCAGTTCCAAAGAGTATTCCTCTATGGTTGCTCTTAAAGAAGTAGG
GATGGTAGGCCAGAGACTCGTGGTTCTAATATTGGCAGGTTGAGTAAGAA
GAAAAAGCATGTCTCCCCAATCAAGCTTTTGATCCTTGGAGACAACGAAA
GCTTGCCCATAACCTTCAATG
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