CX054047

Overview
NameCX054047
Unique NameCX054047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.238e-19
Identity = 58/202 (28.71%), Postives = 97/202 (48.02%), Query Frame = -2
Query:  274 GYGQAFVVSKDQKLDWGDMLFLLTQPAN--IRTTSLWPTIPTSLRATIEEYSL---ELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVED 864
            GY  +F      KL W + L   + P++  +    +  T+    R   E Y+    E+ ++++ +++++ ++LG+        FE     +R+NYYPPC +    +G  PH D  +                + G+W  ++P   AF++NIGD    +SNG YKS  HRAVVN    R S+A F  P M+  + P P ++ D
Sbjct:  114 GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTE-GRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAP-PGTLVD 313          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 58/212 (27.36%), Postives = 97/212 (45.75%), Query Frame = -2
Query:  274 IEGYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNL-GIEPGKL-----------ASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTT-IGPLPNSVED 870
            ++GYG     +   + +W D LF L  P  +   +LWP  P    A   ++    + +   LL +++  L G + G              +  +D +  +++NYYP C Q    +G+  H+D V+              V    +WV  +  PG  I+++GD +EI+SNG Y S+ HR +VN E  R+S   F  P  ++  + PLP  V +
Sbjct:  135 LQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTD-VSALSFILHNGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTE 345          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.207e-18
Identity = 62/221 (28.05%), Postives = 101/221 (45.70%), Query Frame = -2
Query:  232 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLR-------ATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGP---LPNSVEDRAIYKNITHEEFIK 864
            GY  +F      KL W + L         R+ S+      +L           +EY   +  +++ +++L+  +LG++       FE+    +R+NYYPPC + +  +G  PH D  +                +  +W  ++P P AF++NIGD    +SN  YKS  HRAVVN E ER S+A F  P  +  + P   L +S+  R  Y + T   F++
Sbjct:  135 GYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVE-NQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRR-YPDFTWSMFLE 353          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18
Identity = 63/237 (26.58%), Postives = 109/237 (45.99%), Query Frame = -2
Query:  178 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQG---IRMNYYPPCAQ----ANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDR-AIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 864
            GYG   +   +  + W + L L T   +    SL+       R  +++Y   ++ +   +L LMA+ L I+P  + S      Q     R+N+YP C +       +IG   H+D                   + G W+ V P   +F IN+GD +++M+NG +KS+ HR + N    RLS+  F  P ++  I PLP+ ++ + ++YK  T  E+      S+L    L ++ R+
Sbjct:   91 GYGNKRI-GLNGDIGWIEYLLLTTNQDH--NFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLMKGKESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 59/202 (29.21%), Postives = 100/202 (49.50%), Query Frame = -2
Query:  178 PTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRM--NYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPN---------SVEDRAIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 750
            P   R  + +YS  ++ + + L +L+++ LG++P  L  +  D  +G+ +  +YYP C Q     G + HSDS                + +  +W+ V  IPGA +INI D++++++N ++KS+EHR + N    R+SVA        T  G  P          S E+  IYK +T ++FI +    + D  + LS  RL
Sbjct:  201 PDVCRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEM--DCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLE-NQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 61/219 (27.85%), Postives = 105/219 (47.95%), Query Frame = -2
Query:  178 WGDMLFLLTQPANIRTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAF--HSPNMNTTI-GPLPN--SVEDRAIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 819
            W D +F    P      SL    PT    ++ ++S +++K+   LL+L+++ LG++   L    +        NYYPPC Q    +G   H+D +               V     WV V P PG+ ++NIGD ++++SN +Y S+EHRA+ N    R+S+  F   SP  ++ + GP+    S ++   Y+  T ++    +    LDG + LS  ++
Sbjct:  150 WRDTIFCYMAP---NPPSL-QEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTD-IGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 59/200 (29.50%), Postives = 105/200 (52.50%), Query Frame = -2
Query:  178 IPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRM--NYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVN-PEKERLSVAAFHSPNMNTT---IGPLPN--SVEDRAIYKNITHEEFIKLVVTSKLDGKNLLSHVRL 753
            +P   R  + EYS ++  +  FL +L+++ LG+EP  L  +  D  +G+ M  +YYPPC + +  +G + HSD+ +              V++ G W  V  + GA IINIGD++++++N ++ S+EHR + N   + R+SVA F +  +       GP+    S E+   Y+  T +++        LDG + L H ++
Sbjct:  173 LPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDM--DCSKGLLMLSHYYPPCPEPDLTLGTSQHSDN-SFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.021e-17
Identity = 56/196 (28.57%), Postives = 98/196 (50.00%), Query Frame = -2
Query:  211 RTTSLWPTIPTSLRATIEEYSLELQKVTIFLLKLMAKNLGIEPG-KLASLFE--DGIQGIRMNYYPPCAQA--NRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSV--EDRAIYKNITHEEFIKLVVTSKL 777
            +TT+++   P   R  +EEY  E+++++   L+++ + L IEP  KL+ L +  +    +RMN+YP   +      IG   H+D                   K G WV V P   +F + +GD +++M+NG +KS++HR V N ++ R+S+  F  P ++  I PL   V  +D  +Y   T  ++      +KL
Sbjct:  121 KTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKL 316          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.475e-16
Identity = 54/203 (26.60%), Postives = 90/203 (44.33%), Query Frame = -2
Query:  277 GYGQAFVVSKDQKLDWGDMLFLLTQPANIRTTSLWPTIPTSLRATIEE-------YSLELQKVTIFLLKLMAKNLGIEPGKLASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVE 864
            GY  +F      KL W + L       N  + ++      +L    E+       Y   +  +++ +++L+  +LG+        FE+    +R+N+YPPC   +  +G  PH D  +                   +W  ++P P AF++NIGD    +SNG +KS  HRAVVN E  R S+A F  P  +  + P  + +E
Sbjct:  133 GYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVD-NQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILE 334          
BLAST of CX054047 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = -2
Query:  250 YSLELQKVTIFLLKLMAKNLGIEPGK---LASLFEDGIQGIRMNYYPPCAQANRVIGLTPHSDSVAXXXXXXXXXXXXXXVKKYGKWVPVKPIPGAFIINIGDIIEIMSNGEYKSIEHRAVVNPEKERLSVAAFHSPNMNTTIGPLPNSVEDR--AIYKNIT 720
            Y  E+ ++++ L++++ ++LGI   +       F+     +R+NYYP C +    +G  PH D  +                + G+W  ++P PGA ++N+GD    +SN  Y+S  HRAVVN    R S+A F  P M+T + P    V+D    +Y + T
Sbjct:  174 YCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAE-GRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVYPDFT 334          
The following BLAST results are available for this feature:
BLAST of CX054047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAO1A_WHEAT9.238e-1928.71Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
LDOX_MAIZE1.207e-1827.36Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
GAOX1_ARATH1.207e-1828.05Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
G2OX1_PEA4.585e-1826.58Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
DV4H_CATRO7.821e-1829.21Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_SOLLC7.821e-1827.851-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH7.821e-1829.501-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G2OX3_ARATH1.021e-1728.57Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
GAOX2_ARATH1.475e-1626.60Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
GAOX1_ORYSJ3.286e-1629.63Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H08-O16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054047 ID=CX054047; Name=CX054047; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTTTTTTTTTGATGAATAGAAATTAGATTATGAGTAAAATCTT
TTCTTGCCATTGCACAACTCAGTAAGCAGACAAAAGCGCTTAGAGGTTTA
ATCTGTAACTGGCATTAGATGGCATAGCATTTTTAAGGGGCACACTCTTG
GTGAAATTCTCTGACCATTTATGGCTCAAGTCTCACATGACTCAATAGGT
TCTTACCATCAAGTTTGCTGGTTACAACGAGCTTTATAAATTCTTCGTGT
GTTATATTCTTGTAAATTGCTCTGTCCTCCACGGAATTTGGTAAAGGACC
AATAGTAGTATTCATGTTTGGACTGTGAAATGCTGCTACCGAAAGGCGTT
CCTTTTCTGGATTCACAACAGCTCTGTGCTCTATGCTCTTGTATTCTCCA
TTGCTCATTATCTCAATGATGTCTCCAATATTGATAATGAATGCACCTGG
GATTGGTTTGACTGGTACCCACTTGCCATATTTCTTTACCTGTAAACCTT
GTACTTGGTTCACTTGAACCAACAATGTTAATGCAACAGAGTCAGAGTGT
GGAGTGAGACCAATAACCCTGTTGGCCTGGGCACATGGTGGATAATAATT
CATTCTTATTCCTTGTATACCATCTTCAAACAAGCTTGCAAGTTTCCCAG
GTTCAATCCCCAAATTCTTAGCCATCAACTTCAACAGAAAGATTGTAACC
TTTTGCAGTTCCAAAGAGTATTCCTCTATGGTTGCTCTTAAAGAAGTAGG
GATGGTAGGCCAGAGACTCGTGGTTCTAATATTGGCAGGTTGAGTAAGAA
GAAAAAGCATGTCTCCCCAATCAAGCTTTTGATCCTTGGAGACAACGAAA
GCTTGCCCATAACCTTCAATG
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