CX054046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11 Identity = 51/207 (24.64%), Postives = 99/207 (47.83%), Query Frame = 1 Query: 193 SAMISILGRLGKVDLAKNIFETALNEGY---GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 804 +A++S L ++ K + +G G Y LI Y +SG + + +F + + + T+N++I + G K + +F ML ++P+ +T S+L CS+ G + + L + + +DQ++F + L+D K + A ++ ++ + N VTY+TMI GY + G + A+++F M+ GI Sbjct: 423 TALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY----LIDMYSKSGLIRISQKLFEGSG--YAERDQATWNSMISGYTQNGHTEKTFL-VFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKER----NSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11 Identity = 46/177 (25.99%), Postives = 87/177 (49.15%), Query Frame = 1 Query: 262 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 792 + G + V+ S+L YG+ G +A VF+ + N V +NA++ + G + + + +F DM + GV+P R+T ++ L+ + G E + + G++ D +LL+ CK ++ A + M K +VVT++ +I GY + G ++DA+ M M+ Sbjct: 200 VKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIP----DRNAVAWNALMVGYVQNGKN-EEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEK----DVVTWNLIISGYVQQGLVEDAIYMCQLMR 367
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11 Identity = 49/205 (23.90%), Postives = 102/205 (49.76%), Query Frame = 1 Query: 193 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVE-IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 804 +A++ + G +D+A+ +F+ E V++++ +IS Y R +E+I + M+R + P VT V+ AC K V K + + + + + +P N+L+ + G + A +F M R D+ ++ +++ + + LA +MP + + ++++ MIDGY +AG +++L +F EM+ G+ Sbjct: 174 NALVKMYSLCGLMDMARGVFDRRCKED----VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR----DVISWTSIVKGYVERGNLKLARTYFDQMPVR----DRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11 Identity = 45/167 (26.95%), Postives = 83/167 (49.70%), Query Frame = 1 Query: 196 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 693 +++S LG + + + + G+ V+ +A IS Y R G +A +VF+ M +LV++ A+I G G+ ++ +FDDM++ G++PD F +L+ CS GL + LF M ++ Y+ L+D + + ++D A E + MP + Sbjct: 262 SVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP----VKSLVSWTAMIGCYGMHGMGEIGLM-LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVE 423
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11 Identity = 54/206 (26.21%), Postives = 94/206 (45.63%), Query Frame = 1 Query: 145 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 762 FAV+RE N + L+ A++ + GK+ ET L + A+++LIS Y G +A+ +F M +KP+ T + I AC G+ +I ++R V D NSL+ + S+ G ++A +FN++ HR + T+N++L + A + M + N VT+ +I + G L+ Sbjct: 328 FAVRRELDPNYES-LSLALVELYAECGKLSDC----ETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL-VPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHR----SVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLE 522 The following BLAST results are available for this feature:
BLAST of CX054046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >CX054046 ID=CX054046; Name=CX054046; organism=Citrus sinensis; type=EST; length=805bpback to top |