CX054046

Overview
NameCX054046
Unique NameCX054046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 51/207 (24.64%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  193 SAMISILGRLGKVDLAKNIFETALNEGY---GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 804
            +A++S    L   ++ K      + +G    G   Y    LI  Y +SG  + +  +F      + + +  T+N++I    + G   K  + +F  ML   ++P+ +T  S+L  CS+ G  +  + L    + + +DQ++F  + L+D   K   +  A ++ ++   +    N VTY+TMI GY + G  + A+++F  M+  GI
Sbjct:  423 TALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY----LIDMYSKSGLIRISQKLFEGSG--YAERDQATWNSMISGYTQNGHTEKTFL-VFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKER----NSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618          
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 46/177 (25.99%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  262 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 792
            +  G  + V+  S+L   YG+ G   +A  VF+ +       N V +NA++    + G + +  + +F DM + GV+P R+T ++ L+  +  G  E  +      +  G++ D     +LL+  CK   ++ A  +   M  K    +VVT++ +I GY + G ++DA+ M   M+
Sbjct:  200 VKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIP----DRNAVAWNALMVGYVQNGKN-EEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEK----DVVTWNLIISGYVQQGLVEDAIYMCQLMR 367          
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 49/205 (23.90%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  193 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVE-IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 804
            +A++ +    G +D+A+ +F+    E     V++++ +IS Y R    +E+I +   M+R  + P  VT   V+ AC K  V  K + + + + +     +P     N+L+   +  G  + A  +F  M  R    D+ ++ +++    +   + LA     +MP +    + ++++ MIDGY +AG  +++L +F EM+  G+
Sbjct:  174 NALVKMYSLCGLMDMARGVFDRRCKED----VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR----DVISWTSIVKGYVERGNLKLARTYFDQMPVR----DRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364          
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 45/167 (26.95%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  196 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK 693
            +++S    LG   +   + +   + G+   V+  +A IS Y R G   +A +VF+ M       +LV++ A+I   G  G+    ++ +FDDM++ G++PD   F  +L+ CS  GL +    LF  M     ++     Y+ L+D + +  ++D A E +  MP +
Sbjct:  262 SVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP----VKSLVSWTAMIGCYGMHGMGEIGLM-LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVE 423          
BLAST of CX054046 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 54/206 (26.21%), Postives = 94/206 (45.63%), Query Frame = 1
Query:  145 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYHLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 762
            FAV+RE   N +  L+ A++ +    GK+       ET L       + A+++LIS Y   G   +A+ +F  M    +KP+  T  + I AC   G+      +I   ++R  V  D    NSL+ + S+ G  ++A  +FN++ HR     + T+N++L    +      A  +   M    +  N VT+  +I   +  G L+
Sbjct:  328 FAVRRELDPNYES-LSLALVELYAECGKLSDC----ETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL-VPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHR----SVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLE 522          
The following BLAST results are available for this feature:
BLAST of CX054046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
PP246_ARATH6.261e-1124.64Pentatricopeptide repeat-containing protein At3g22... [more]
PP431_ARATH8.177e-1125.99Pentatricopeptide repeat-containing protein At5g55... [more]
PP235_ARATH8.177e-1123.90Putative pentatricopeptide repeat-containing prote... [more]
PP223_ARATH8.177e-1126.95Putative pentatricopeptide repeat-containing prote... [more]
PP111_ARATH8.177e-1126.21Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H07-O14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054046 ID=CX054046; Name=CX054046; organism=Citrus sinensis; type=EST; length=805bp
ACTGCTTTCGCTAGAGATGACGTGTCTCTCGGTGATATTTTGAAAAAGTT
CGAGTTTAAACTCTGTGGTGCTGACGACTACACGTTCCTGCTTCGAGAGC
TTGGAAACCGAGGTGAGTGGTCAAAGGCCATCCAATGTTTTGCCTTTGCA
GTCAAAAGGGAGGAAAGAAAGAATGATCAAGGGAAATTAGCGAGTGCCAT
GATCAGCATTCTTGGTAGATTAGGAAAAGTTGATCTTGCTAAGAATATTT
TCGAAACTGCGTTAAATGAAGGTTATGGAAACACTGTATATGCTTTTTCT
GCGTTAATTAGTGCTTATGGGAGGAGTGGTTATTGCCAAGAGGCCATAAG
TGTGTTTAATTCTATGAAAAGATATCATTTAAAGCCGAATTTAGTCACTT
ACAATGCTGTGATTGATGCGTGTGGTAAAGGGGGTGTAGATTTTAAGCAT
GTGGTGGAGATTTTTGATGATATGTTAAGAAATGGAGTGCAGCCTGATCG
AATAACGTTTAATTCTTTGCTTGCCGTGTGTAGTAGAGGAGGATTATGGG
AGGCAGCGAGGAATTTGTTCAATGAGATGGTTCATAGAGGGATTGATCAG
GATATTTTCACTTATAATACTCTATTAGATGCCATTTGCAAAGGTGCGCA
AATGGATTTGGCTTTTGAGATCATGGCGGAAATGCCCGCCAAGAATATCT
CTCCCAATGTTGTGACTTATAGCACAATGATTGATGGGTATGCAAAGGCT
GGGAGATTAGATGACGCTTTGAATATGTTTAGTGAAATGAAGTTTTTGGG
AATTG
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