CX054044

Overview
NameCX054044
Unique NameCX054044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.020e-29
Identity = 66/146 (45.21%), Postives = 99/146 (67.81%), Query Frame = -3
Query:  362 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 799
            ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:  123 ISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.940e-26
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = -3
Query:  350 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKV 799
            VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     + +S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:  138 VAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.387e-16
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  117 VVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 50/156 (32.05%), Postives = 81/156 (51.92%), Query Frame = -3
Query:  335 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 799
            +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    +       LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  121 IAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.440e-15
Identity = 49/143 (34.27%), Postives = 73/143 (51.05%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  117 VVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  386 APIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 796
            AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S  +    L++    PT A    +   A+ N  AV++
Sbjct:  123 APCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.273e-15
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = -3
Query:  374 PIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 793
            P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +            LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  119 PKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = -3
Query:  362 PIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 793
            P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +            L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  118 PRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 47/143 (32.87%), Postives = 68/143 (47.55%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+P+VL + E + +            L++ I+YPT      +   AY     VA+   Y
Sbjct:  116 VVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 42/147 (28.57%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  362 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 799
            VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   GL +++V+ +G ++ PE L+L  D+      +       L++   YPT   AP M  +A  N  ++AL      P+
Sbjct:  119 VAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265          
The following BLAST results are available for this feature:
BLAST of CX054044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_LEIIN1.020e-2945.2160S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU8.940e-2638.6760S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_PYRHO8.387e-1635.66Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METJA1.095e-1532.05Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_PYRAB2.440e-1534.27Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METVO4.162e-1533.33Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRFU9.273e-1532.62Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THEON3.524e-1431.72Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PYRKO3.524e-1432.87Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_HALMA3.524e-1428.5750S ribosomal protein L10E OS=Haloarcula marismort... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_9H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H05-O10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054044 ID=CX054044; Name=CX054044; organism=Citrus sinensis; type=EST; length=804bp
AAATAACAAATAAATAATTTCTTAAACATGTAAAACTTGTATGGGACAGA
ATATATATTGTCCTAAATAAAGGATTATATAAAATAAAAAGGAAACTGAG
TCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAAACATAACC
ATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCG
AACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGCTCTTCCTT
CTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAA
CCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTC
ACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAAC
CACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGCCAGGGTTG
GGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACCTGAGGCG
AACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTA
GACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGG
GTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTG
TCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTT
GTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAAGAGGTCTGGGAGG
GGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACC
AAAC
back to top