CX054044

Overview
NameCX054044
Unique NameCX054044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = -3
Query:  338 VAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYL 799
            +AP D+V+ P  TG  P    + FQ + + T + KG + I      ++KG+ +   +A +L  L I+P   GL +  +Y  G VYS EVL L+ + +    A+  S   A+A +  +        +   A   + A ALA    F   D VK++L
Sbjct:  112 IAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAIAKSSMFFVDEVLRDLLAEA--KIKADALALAGQFITEDNVKDFL 264          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = -3
Query:  374 APIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 796
            AP D+ V  G+TG+ P    S  + + IP  I+KG + I     +I++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  123 APCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 40/143 (27.97%), Postives = 73/143 (51.05%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            +A  D+V+ P  T   P  + S FQ   +P  I KG + I + V  ++KGD +   +A +L  L I P + GL + + YE+G +++ +VL +S++ ++   AS      +LA+  ++      P M   AY    ++A+   +
Sbjct:  112 IAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 39/143 (27.27%), Postives = 75/143 (52.45%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            VAP D+ +  G+TG+ P    S  + + +P  I+KG + I     ++++G+ V    + +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  122 VAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = -3
Query:  374 APIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 796
            AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ LGI+P + GL V  VYE+G +Y+   L + E++ + K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  123 APCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 36/139 (25.90%), Postives = 75/139 (53.96%), Query Frame = -3
Query:  386 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 799
            +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P   G+ + +V E  ++Y+ +VL + E++ ++  A+       L++        +AP +   A ++ + +A+
Sbjct:  112 IAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = -3
Query:  374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799
            +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ L I+P + GL V  VYE+G +Y+   L + E++ V K     +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  122 IAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11
Identity = 37/139 (26.62%), Postives = 72/139 (51.80%), Query Frame = -3
Query:  386 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 799
            +A  D+V+P G+TG +P       Q + IP KI+KG + +     L+  G++V ++ A+ L+++ I P   G+ +++VYE  ++Y+ EVL + E+  +    +       L++  + PT      +   AY   + V +
Sbjct:  114 IATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 34/113 (30.09%), Postives = 61/113 (53.98%), Query Frame = -3
Query:  464 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 799
            +AP D+VVP G+TG  P       Q + IP KI KG + +     +++ G+++    A +L +L I+P   G+ +++ YEN +VY+ +VL + E+  +       S    L++
Sbjct:  114 IAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226          
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 39/131 (29.77%), Postives = 60/131 (45.80%), Query Frame = -3
Query:  410 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 799
            +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y PE+L + E                LA+  +YPT A    +   A+
Sbjct:  118 IAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248          
The following BLAST results are available for this feature:
BLAST of CX054044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_THEAC1.933e-1229.68Acidic ribosomal protein P0 homolog OS=Thermoplasm... [more]
RLA0_METM61.933e-1229.58Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_PICTO2.525e-1227.97Acidic ribosomal protein P0 homolog OS=Picrophilus... [more]
RLA0_METM52.525e-1227.27Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM73.298e-1228.87Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METST7.347e-1225.90Acidic ribosomal protein P0 homolog OS=Methanospha... [more]
RLA0_METMP7.347e-1228.67Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METS31.253e-1126.62Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]
RLA0_METTH6.220e-1130.09Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_METBF6.220e-1129.77Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H05-O10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054044 ID=CX054044; Name=CX054044; organism=Citrus sinensis; type=EST; length=804bp
AAATAACAAATAAATAATTTCTTAAACATGTAAAACTTGTATGGGACAGA
ATATATATTGTCCTAAATAAAGGATTATATAAAATAAAAAGGAAACTGAG
TCTACAAAAAGCATTAAGAAAATAAAGCAAACAAAACCAAAAACATAACC
ATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCG
AACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAGGCTCTTCCTT
CTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAA
CCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTC
ACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAAC
CACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCTGCCAGGGTTG
GGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACCTGAGGCG
AACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTA
GACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGG
GTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTG
TCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTT
GTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAAGAGGTCTGGGAGG
GGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACC
AAAC
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