CX054044
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12 Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = -3 Query: 338 VAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYL 799 +AP D+V+ P TG P + FQ + + T + KG + I ++KG+ + +A +L L I+P GL + +Y G VYS EVL L+ + + A+ S A+A + + + A + A ALA F D VK++L Sbjct: 112 IAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAIAKSSMFFVDEVLRDLLAEA--KIKADALALAGQFITEDNVKDFL 264
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12 Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = -3 Query: 374 APIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 796 AP D+ V G+TG+ P S + + IP I+KG + I +I++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 123 APCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12 Identity = 40/143 (27.97%), Postives = 73/143 (51.05%), Query Frame = -3 Query: 374 VAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799 +A D+V+ P T P + S FQ +P I KG + I + V ++KGD + +A +L L I P + GL + + YE+G +++ +VL +S++ ++ AS +LA+ ++ P M AY ++A+ + Sbjct: 112 IAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12 Identity = 39/143 (27.27%), Postives = 75/143 (52.45%), Query Frame = -3 Query: 374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799 VAP D+ + G+TG+ P S + + +P I+KG + I ++++G+ V + +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 122 VAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12 Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = -3 Query: 374 APIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 796 AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + L++ PT A + A+ + AV++ + + Sbjct: 123 APCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12 Identity = 36/139 (25.90%), Postives = 75/139 (53.96%), Query Frame = -3 Query: 386 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 799 +AP D+VVP G+T P Q + IP KI+KG++ + +++ +G+++ + A +L KL I P G+ + +V E ++Y+ +VL + E++ ++ A+ L++ +AP + A ++ + +A+ Sbjct: 112 IAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12 Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = -3 Query: 374 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 799 +AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ L I+P + GL V VYE+G +Y+ L + E++ V K + L++ PT A + A+ + AV++ + + Sbjct: 122 IAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.253e-11 Identity = 37/139 (26.62%), Postives = 72/139 (51.80%), Query Frame = -3 Query: 386 VAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 799 +A D+V+P G+TG +P Q + IP KI+KG + + L+ G++V ++ A+ L+++ I P G+ +++VYE ++Y+ EVL + E+ + + L++ + PT + AY + V + Sbjct: 114 IATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11 Identity = 34/113 (30.09%), Postives = 61/113 (53.98%), Query Frame = -3 Query: 464 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 799 +AP D+VVP G+TG P Q + IP KI KG + + +++ G+++ A +L +L I+P G+ +++ YEN +VY+ +VL + E+ + S L++ Sbjct: 114 IAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226
BLAST of CX054044 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11 Identity = 39/131 (29.77%), Postives = 60/131 (45.80%), Query Frame = -3 Query: 410 VAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 799 +AP D++V G T P Q IP I+ G V + + + G+ V A +L KL I P GL +++VY+NG++Y PE+L + E LA+ +YPT A + A+ Sbjct: 118 IAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248 The following BLAST results are available for this feature:
BLAST of CX054044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX054044 ID=CX054044; Name=CX054044; organism=Citrus sinensis; type=EST; length=804bpback to top |