CX054043

Overview
NameCX054043
Unique NameCX054043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:319..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19
Identity = 60/222 (27.03%), Postives = 102/222 (45.95%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 668
            +R  LRG +++ + +NT+++  I+  A++        L   ++G   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+  +Y+P+VL + E + +            L++  +YPT      +   AY     VA+   Y  P+
Sbjct:   41 MRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19
Identity = 63/222 (28.38%), Postives = 99/222 (44.59%), Query Frame = 3
Query:    3 NIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 665
            ++RR L G + V M +NT++ R +        N  F  L   + G V LI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G++ +     ++ +G++V    A +LA+LGI P   GL ++ V+  G ++ P+ L +  D+      S     T L++   YPT   AP +   A     AV L      P
Sbjct:   48 SMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18
Identity = 59/223 (26.46%), Postives = 109/223 (48.88%), Query Frame = 3
Query:    3 NIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 668
            ++RR L G + + + +NT+++R +        +    +L   + G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   GL +++V+ +G ++ PE L+L  D+      +       L++   YPT   AP M  +A  N  ++AL      P+
Sbjct:   48 DMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 55/198 (27.78%), Postives = 92/198 (46.46%), Query Frame = 3
Query:   66 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 656
            R +R+  E TG    + L     G V LI T                 APA+ G +A  D+V+ P  T   P  + S FQ   +P  I KG + I + V  ++KGD +   +A +L  L I P + GL + + YE+G +++ +VL +S++ ++   AS      +LA+  ++      P M   AY    ++A+   +
Sbjct:   57 RLLRLAIENTGKNNIVKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 52/214 (24.30%), Postives = 106/214 (49.53%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 644
            +R+ L  ++++ M +    K  I++  E +       L   L+G   ++FTK +              APA+ G +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P   G+ + +V E  ++Y+ +VL + E++ ++  A+       L++        +AP +   A ++ + +A+
Sbjct:   41 MRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 51/188 (27.13%), Postives = 92/188 (48.94%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 566
            +R+ LR  +++ M K T++   +     +  N   L+    ++G   LIFT  +              APA+ G +AP D+VVP G+TG  P       Q + IP KI KG + +     +++ G+++    A +L +L I+P   G+ +++ YEN +VY+ +VL + E+  +       S    L++
Sbjct:   41 MRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLS--DYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16
Identity = 52/214 (24.30%), Postives = 102/214 (47.66%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 644
            +R+ L   +V+ M K  ++   +        N   ++L   ++G V +I T+ +              APA+ G +A  D+V+P G+TG +P       Q + IP KI+KG + +     L+  G++V ++ A+ L+++ I P   G+ +++VYE  ++Y+ EVL + E+  +    +       L++  + PT      +   AY   + V +
Sbjct:   41 MRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 53/206 (25.73%), Postives = 88/206 (42.72%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 620
            IRR L+  +V+ + +N++ +R +    E     +   +   L     L+FT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y PE+L + E                LA+  +YPT A    +   A+
Sbjct:   48 IRRDLKDVAVLKVSRNSLTERALNQLGE-----SIPEMNKYLDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14
Identity = 61/227 (26.87%), Postives = 102/227 (44.93%), Query Frame = 3
Query:    6 IRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADK 677
            IR  LR  D+++ M +NT+M+  +    EK      L  L+  ++G V  IFT  D              APA+ G +AP D+VVP G T  +P    S  Q   +P +I  G V I     L+++G+++    A +L KL I P   G+ + ++   G+++  + L +  D+  +           L++  + PT   A  +   A+    A+ LA     P  D+
Sbjct:   54 IRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEGTLFERDDLAIDFDEYEDMAKEAAQHAFNLSINAAIPTAETADVIVAKAHTE--ALNLAVNAGVPVPDE 275          
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METMA (Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei GN=rplP0 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 53/206 (25.73%), Postives = 88/206 (42.72%), Query Frame = 3
Query:    6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 620
            IRR L+  +V+ + +NT+ +R +    E     +   +   L     LIFT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L+KL I P   GL +++ Y++G++Y PE+L + E                L++  +YPT A    +   AY
Sbjct:   48 IRRDLKDVAVLKVSRNTLTERALNQLGE-----SIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIYEPELLAVDESKYFSDIIRAAQNAFNLSVNTAYPTGATIGTLLAKAY 248          
The following BLAST results are available for this feature:
BLAST of CX054043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RLA0_THEGJ1.474e-1927.03Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_HALVO4.290e-1928.38Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALMA1.248e-1826.4650S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_PICTO5.244e-1727.78Acidic ribosomal protein P0 homolog OS=Picrophilus... [more]
RLA0_METST5.244e-1724.30Acidic ribosomal protein P0 homolog OS=Methanospha... [more]
RLA0_METTH1.993e-1627.13Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_METS35.798e-1624.30Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]
RLA0_METBF1.865e-1425.73Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_METKA2.436e-1426.87Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]
RLA0_METMA7.087e-1425.73Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H05-O10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054043 ID=CX054043; Name=CX054043; organism=Citrus sinensis; type=EST; length=892bp
AGAACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTAATGGGAAAG
AACACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAA
CACTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGA
TTTTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTAC
AAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGT
TGTTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCC
AGGTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATC
ACACCTGTGGAGCTTATCAGGAAGGGTGACAAGGTGGGATCTTCTGAGGC
AGCCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTG
TCCAGTCTGTCTATGAAAACGGTTCTGTCTACAGCCCAGAGGTCCTTGAC
CTGTCTGAAGATGACCTAGTGGAGAAGTTCGCCTCAGGTGTATCAATGGT
CACCGCTCTGGCACTTGCCATCTCATACCCAACCCTGGCAGCTGCTCCAC
ACATGTTCATCAATGCATACAAGAATGTGGTTGCTGTTGCTCTTGCAACT
GAGTATTCATTCCCTCAGGCTGACAAAGTGAAGGAGTACCTGGCGGACCC
AAGCAAGTTTGCTGTTGCTGCTGCCCCGGTTGCTGGCGGTGGTGATGCCC
CAGCTGCTGCTGCAAAGGAGGAAGAGAAGAAGGAAGAGCCTGCTGAGGAG
TCTGATGGAGATATGGGCTTCAGCTTGTTCGACTAAGTGCACTGTCATTT
GTGCTATAACTTAGGATTTTGACGTTTATGGGTATGTTTTTG
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