CX054043
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19 Identity = 60/222 (27.03%), Postives = 102/222 (45.95%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 668 +R LRG +++ + +NT+++ I+ A++ L ++G ++ T+ + APA+ G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+ +Y+P+VL + E + + L++ +YPT + AY VA+ Y P+ Sbjct: 41 MRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.290e-19 Identity = 63/222 (28.38%), Postives = 99/222 (44.59%), Query Frame = 3 Query: 3 NIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFP 665 ++RR L G + V M +NT++ R + N F L + G V LI T + AP G VAP D+V+P G+TG+DP Q + +I G++ + ++ +G++V A +LA+LGI P GL ++ V+ G ++ P+ L + D+ S T L++ YPT AP + A AV L P Sbjct: 48 SMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18 Identity = 59/223 (26.46%), Postives = 109/223 (48.88%), Query Frame = 3 Query: 3 NIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 668 ++RR L G + + + +NT+++R + + +L + G VGLI T + AP G VAP D+V+P G+TG+DP Q + +I +G++++++ ++ G++V + +L +LGI P GL +++V+ +G ++ PE L+L D+ + L++ YPT AP M +A N ++AL P+ Sbjct: 48 DMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17 Identity = 55/198 (27.78%), Postives = 92/198 (46.46%), Query Frame = 3 Query: 66 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 656 R +R+ E TG + L G V LI T APA+ G +A D+V+ P T P + S FQ +P I KG + I + V ++KGD + +A +L L I P + GL + + YE+G +++ +VL +S++ ++ AS +LA+ ++ P M AY ++A+ + Sbjct: 57 RLLRLAIENTGKNNIVKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17 Identity = 52/214 (24.30%), Postives = 106/214 (49.53%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 644 +R+ L ++++ M + K I++ E + L L+G ++FTK + APA+ G +AP D+VVP G+T P Q + IP KI+KG++ + +++ +G+++ + A +L KL I P G+ + +V E ++Y+ +VL + E++ ++ A+ L++ +AP + A ++ + +A+ Sbjct: 41 MRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16 Identity = 51/188 (27.13%), Postives = 92/188 (48.94%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALAL 566 +R+ LR +++ M K T++ + + N L+ ++G LIFT + APA+ G +AP D+VVP G+TG P Q + IP KI KG + + +++ G+++ A +L +L I+P G+ +++ YEN +VY+ +VL + E+ + S L++ Sbjct: 41 MRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLS--DYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16 Identity = 52/214 (24.30%), Postives = 102/214 (47.66%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 644 +R+ L +V+ M K ++ + N ++L ++G V +I T+ + APA+ G +A D+V+P G+TG +P Q + IP KI+KG + + L+ G++V ++ A+ L+++ I P G+ +++VYE ++Y+ EVL + E+ + + L++ + PT + AY + V + Sbjct: 41 MRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14 Identity = 53/206 (25.73%), Postives = 88/206 (42.72%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 620 IRR L+ +V+ + +N++ +R + E + + L L+FT +P + G +AP D++V G T P Q IP I+ G V + + + G+ V A +L KL I P GL +++VY+NG++Y PE+L + E LA+ +YPT A + A+ Sbjct: 48 IRRDLKDVAVLKVSRNSLTERALNQLGE-----SIPEMNKYLDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.436e-14 Identity = 61/227 (26.87%), Postives = 102/227 (44.93%), Query Frame = 3 Query: 6 IRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADK 677 IR LR D+++ M +NT+M+ + EK L L+ ++G V IFT D APA+ G +AP D+VVP G T +P S Q +P +I G V I L+++G+++ A +L KL I P G+ + ++ G+++ + L + D+ + L++ + PT A + A+ A+ LA P D+ Sbjct: 54 IRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEGTLFERDDLAIDFDEYEDMAKEAAQHAFNLSINAAIPTAETADVIVAKAHTE--ALNLAVNAGVPVPDE 275
BLAST of CX054043 vs. ExPASy Swiss-Prot
Match: RLA0_METMA (Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei GN=rplP0 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14 Identity = 53/206 (25.73%), Postives = 88/206 (42.72%), Query Frame = 3 Query: 6 IRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAY 620 IRR L+ +V+ + +NT+ +R + E + + L LIFT +P + G +AP D++V G T P Q IP I+ G V + + + G+ V A +L+KL I P GL +++ Y++G++Y PE+L + E L++ +YPT A + AY Sbjct: 48 IRRDLKDVAVLKVSRNTLTERALNQLGE-----SIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIYEPELLAVDESKYFSDIIRAAQNAFNLSVNTAYPTGATIGTLLAKAY 248 The following BLAST results are available for this feature:
BLAST of CX054043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CX054043 ID=CX054043; Name=CX054043; organism=Citrus sinensis; type=EST; length=892bpback to top |