CX054035

Overview
NameCX054035
Unique NameCX054035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX054035_ssr238 microsatellite CX054035_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.289e-17
Identity = 38/126 (30.16%), Postives = 73/126 (57.94%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 662
            FW+ +D + +S+W C+YKY ++ T++F++ N + G  QR++  +K AF  M++ G++    + G+W+++G ++  +   D   D E Y W K+D   +A K+ V++ +     F G+     K FK
Sbjct:  273 FWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 43/128 (33.59%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D + E  +  V +       F+  G+A    K FK
Sbjct:  310 FWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 43/128 (33.59%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D   E  +  V +       F+  G+A+   K FK
Sbjct:  310 FWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 41/125 (32.80%), Postives = 76/125 (60.80%), Query Frame = -1
Query:  315 LWISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 683
            L ++   FW+ +D EG+S+W+ +YK+ +E T +F++ N + G  QR+D  RK  F  +++ G+     + G+W+FRGQ++  F + E +  D E Y+W+K+D   E  K     +++++  +EGE
Sbjct:  302 LTVALPYFWEHFDKEGWSIWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKLDSGSEECK----TLVKEYFAWEGE 421          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G1_YEAST (Elongation factor 1-gamma 1 OS=Saccharomyces cerevisiae GN=CAM1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.989e-17
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQE-IPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPF----EGEALLDAKCFK 662
            FW+ Y+PE YSLW   YKYNDE T++F++ N VGGF  R+  + KY FG +++ G      + G  + RGQ+ +P F  D   D E YD+ K+D  ++  KE ++ M    +P     E + ++D K  K
Sbjct:  288 FWEHYNPEEYSLWKVTYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DVAPDWESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.904e-17
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  348 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQ 662
            FW+ +D E YS+W+ +YKY DE    +++ N + G  QR++  RK AF  + + G +    + G+W++RGQ++  +   D   D E YDWKK+D + +  K+ V+Q
Sbjct:  304 FWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.098e-17
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  310 FWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 5.098e-17
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  310 FWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.098e-17
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  310 FWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 6.659e-17
Identity = 42/128 (32.81%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ++      D   D E Y W+K+D   E  +  V +       F+  G+A+   K FK
Sbjct:  310 FWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
The following BLAST results are available for this feature:
BLAST of CX054035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_CAEEL2.289e-1730.16Probable elongation factor 1-gamma OS=Caenorhabdit... [more]
EF1G_RABIT2.989e-1733.59Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE2.989e-1733.59Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1GA_XENLA2.989e-1732.80Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G1_YEAST2.989e-1737.69Elongation factor 1-gamma 1 OS=Saccharomyces cerev... [more]
EF1G_ARTSA3.904e-1735.85Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_MACFA5.098e-1733.59Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN5.098e-1733.59Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_HORSE5.098e-1733.59Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_RAT6.659e-1732.81Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H01-O2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054035 ID=CX054035; Name=CX054035; organism=Citrus sinensis; type=EST; length=875bp
ACGTAAACGAAAAAACTTATTGTTACGCACTGGATAAAACTGAAGCACCG
TAGATTTGCCCCTTGTAATCCCAACATTATTGACTTTAAACAAAAACATG
AATGTAATATGAAAATTAACTAGAAAGTTCTGATGTATTTAAATCAAAGT
CAATTGAATGCTTAAATAGGGTCAATTTGCTAACAGCACAAAACTAAAGA
TGAAAAATTAGAAAACTTAAATGATTGCAACAGCATTACACACACACACC
AGCTACTTCTCCGGTCTGGTCCGTCTGGATGATCTCACTTGAAGCACTTG
GCATCTAACAAGGCCTCACCCTCGAAAGGTTCATGATCTTCGATCATCTG
GCTTACACGCTCCTTCTGAGCTTCATCATTGATGTCCACCTTCTTCCAAT
CATACAACTCCATGTCGTAACACTCGTCCATTATAAATTGAGGAATCTCT
TGTCCACGGAAAAGCCACAAACCCTTTACCTTGAAAGGTGGCTCCGAGCC
AATAATCAGCATCTTCCCAAAAGCATACTTACGAGCCAAGTCCATTCGCT
GCAGGAATCCGCCCACTTTGTTCAAAGTCACAAATGAGACTGTATTCTCA
TCATTGTACTTGTAATCACAGAACCAAAGAGAGTAGCCCTCCGGATCATA
CATGTCCCAAAATCCTACAAAAGAAATCCACAGAAGAAATATCTTTTAGA
AAAGCTGACTATATGAACACCTGTATCCATCAAAGATTGTCCCTGGTCCA
TACATGCCCAAATTTTAATTTTATTTTTTATATGAAAATACATATTAATA
TTTACCACACATAGTGAAAATTTCACTTCTCGATAGATTAACATCTTCTG
CTGATAACAGTTAAAAAAAAAAAAA
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