CX054035

Overview
NameCX054035
Unique NameCX054035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX054035_ssr238 microsatellite CX054035_ssr238:238..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FW+ +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQE+      D   D E Y W+K+D   E  +  V +       ++  G+A    K FK
Sbjct:  305 FWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 42/133 (31.58%), Postives = 77/133 (57.89%), Query Frame = -1
Query:  291 LWISFVGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCF 683
            L ++   FW+ ++ EG+S+W+ +YK+ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRG ++  F + E +  D E Y W+K+    E+  E    M++++  +EGE     K F
Sbjct:  303 LTVALPYFWEHFEKEGWSIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKL----ESDSEECRTMVKEYFAWEGEFKHVGKAF 430          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G2_YEAST (Elongation factor 1-gamma 2 OS=Saccharomyces cerevisiae GN=TEF4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.136e-16
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEI-PQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPF----EGEALLDAKCFK 662
            FW+ Y+PE YS+W   YKYNDE T++F++ N VGGF  R+  + KY FG +++ G      + G  + RGQ+  P F  D   D E Y++ K+D   E  KE V+ M    +P     E + ++D K  K
Sbjct:  285 FWEHYNPEEYSIWKVGYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DVAPDWESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.937e-16
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 662
            FWD +D +G+SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W FRGQE+      D   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  313 FWDHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWDFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFCWEGAFQHVGKAFNQGKIFK 440          
BLAST of CX054035 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = -1
Query:  288 FWDMYDPEGYSLWFCDYKY-NDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQE-IPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 662
            F++ +DPE YS+W  DY Y  D     F+T N +GGF QR++ +RKY FG  ++IG      + G ++ +G + +P F  D   D   Y + K+DIN    K  +       +P EG  + D K  K
Sbjct:  285 FFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWGSYTFTKLDINKPEDKAFIEDAWAWDKPIEGREVADGKVCK 409          
The following BLAST results are available for this feature:
BLAST of CX054035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_PIG1.136e-1632.81Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1GB_XENLA1.136e-1631.58Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G2_YEAST1.136e-1637.69Elongation factor 1-gamma 2 OS=Saccharomyces cerev... [more]
EF1G_BOVIN1.937e-1634.38Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_SCHPO4.040e-1434.65Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9H01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9H01-O2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054035 ID=CX054035; Name=CX054035; organism=Citrus sinensis; type=EST; length=875bp
ACGTAAACGAAAAAACTTATTGTTACGCACTGGATAAAACTGAAGCACCG
TAGATTTGCCCCTTGTAATCCCAACATTATTGACTTTAAACAAAAACATG
AATGTAATATGAAAATTAACTAGAAAGTTCTGATGTATTTAAATCAAAGT
CAATTGAATGCTTAAATAGGGTCAATTTGCTAACAGCACAAAACTAAAGA
TGAAAAATTAGAAAACTTAAATGATTGCAACAGCATTACACACACACACC
AGCTACTTCTCCGGTCTGGTCCGTCTGGATGATCTCACTTGAAGCACTTG
GCATCTAACAAGGCCTCACCCTCGAAAGGTTCATGATCTTCGATCATCTG
GCTTACACGCTCCTTCTGAGCTTCATCATTGATGTCCACCTTCTTCCAAT
CATACAACTCCATGTCGTAACACTCGTCCATTATAAATTGAGGAATCTCT
TGTCCACGGAAAAGCCACAAACCCTTTACCTTGAAAGGTGGCTCCGAGCC
AATAATCAGCATCTTCCCAAAAGCATACTTACGAGCCAAGTCCATTCGCT
GCAGGAATCCGCCCACTTTGTTCAAAGTCACAAATGAGACTGTATTCTCA
TCATTGTACTTGTAATCACAGAACCAAAGAGAGTAGCCCTCCGGATCATA
CATGTCCCAAAATCCTACAAAAGAAATCCACAGAAGAAATATCTTTTAGA
AAAGCTGACTATATGAACACCTGTATCCATCAAAGATTGTCCCTGGTCCA
TACATGCCCAAATTTTAATTTTATTTTTTATATGAAAATACATATTAATA
TTTACCACACATAGTGAAAATTTCACTTCTCGATAGATTAACATCTTCTG
CTGATAACAGTTAAAAAAAAAAAAA
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