CX054034

Overview
NameCX054034
Unique NameCX054034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAB_MOUSE (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.249e-74
Identity = 140/242 (57.85%), Postives = 183/242 (75.62%), Query Frame = 2
Query:  101 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVIEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI 826
            D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+AE+LG F   VGG ++A+ LLPPLE+L TVEET VRDKAVESL +I  +     +  HF+PLVKRLA+G+WF +R S+CGLF V YP A  A+K E+R  +R LC DD PM RR+AA+ LG+FA  +E   +K+EI+ +F  L  D+QDSVRLLAVE C ++ +LL  +D  A ++P +
Sbjct:   19 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHFVPLVKRLASGDWFMSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMERRAAASKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQEDLEALVIPTL 260          
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAA_CAEEL (Probable serine/threonine-protein phosphatase PP2A regulatory subunit OS=Caenorhabditis elegans GN=paa-1 PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.935e-68
Identity = 133/243 (54.73%), Postives = 174/243 (71.60%), Query Frame = 2
Query:  101 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVIEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 829
            D+ LYPIAVLIDEL+N+D+ LRLNSIR+LSTIA ALG ERTR ELI FL++   D+DEVLL +AE+LG F P VGG ++ + LL PLE L TVEET VRDKAVESL +I  +     + EHF+P+++RLA G+WFT+R S+CGLF V YP    A+K+EL++++R LC+DD PMVRR+AA  LG+FA   E   +   + S   +L  D+QDSVRLL VE   A G LL+  +    I P+++
Sbjct:    9 DDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADKHSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDTPMVRRAAAAKLGEFAKVFEKTAVIEGLHSSLTDLHVDEQDSVRLLTVESAIAFGTLLDKANKKKLIEPILI 251          
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.847e-67
Identity = 128/239 (53.56%), Postives = 172/239 (71.97%), Query Frame = 2
Query:  113 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVIEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI 826
            +PI +LIDELKN+DIQLRLNSI++L +IA+ALG ERTR ELIP+L ++  +D+DEVL+ ++EELG  I +VGG E+A  LLPPL+ L   EE  VR+KAVESLC+I  ++      E F+PL+  L+  +WFT+R S+CGLF V+YP A   +K  LR  +  LC DD PMV+R+AATNLG FA  +E   +KSEI+ +F+ L+ D+QDSVRLL VE C  LG +L  ++ +  ILP I
Sbjct:   12 HPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALLGSMLTNEENIQFILPTI 250          
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAA_SCHPO (Protein phosphatase PP2A regulatory subunit A OS=Schizosaccharomyces pombe GN=paa1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.084e-61
Identity = 126/237 (53.16%), Postives = 164/237 (69.20%), Query Frame = 2
Query:  110 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVIEHFIPLVKRLAAGEWFTARVSSCGLFHVAY-PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 817
            LYPIAVLIDELK+D+I  RLN++ RLSTIA ALG ERTR ELIPFL E+ DD+DEVL A+A++LG F+ YVGG EYA+VLL PLE L   EET VRDKAV+SL ++   + ++ + ++F+PLV+RL+  EWFT+R SS GL+  AY  S   A+K  LR  +  LC D+ PMVRR AATN  KF   V       E + +F  L+ DDQDSVRLL+ +   +L ++L+    + H L
Sbjct:   10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYL 246          
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAA_YEAST (Protein phosphatase PP2A regulatory subunit A OS=Saccharomyces cerevisiae GN=TPD3 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.272e-50
Identity = 103/228 (45.18%), Postives = 155/228 (67.98%), Query Frame = 2
Query:  101 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVIEHFIPLVKRLAAGEWFTARVSSCGLF-HVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLG-KFAATVEAAHLKSE-----IMSIFEELTQDDQDSVRLLAVE 760
            +E LYP+A+L+DELK+DDI  R+ ++++L TIA ALG ERTR ELIPFL+E   DD+DEV   +AE+LG F+PY+GG +YA +LLP LE L + EET VR+KAV+SL  +  ++ ++ +   F+PL++ LA  +WF+++VS+CGLF  V      ++L+  +  +Y QL QDD PMV+R+   NL        +   L ++     I +IF+++  D+QDSV+ LAV+
Sbjct:   33 NESLYPLALLMDELKHDDIANRVEAMKKLDTIALALGPERTRNELIPFLTEVAQDDEDEVFAVLAEQLGKFVPYIGGPQYATILLPVLEILASAEETLVREKAVDSLNNVAQELSQEQLFSDFVPLIEHLATADWFSSKVSACGLFKSVIVRIKDDSLRKNILALYLQLAQDDTPMVKRAVGKNLPILIDLLTQNLGLSTDEDWDYISNIFQKIINDNQDSVKFLAVD 260          
BLAST of CX054034 vs. ExPASy Swiss-Prot
Match: 2AAA_PEA (Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.110e-21
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 2
Query:  668 VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 835
            VEAAHLK++IMS+F++LTQDDQDS R LAVEGC ALGKLLEPQDC+AHILPVIVNF
Sbjct:    1 VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNF 56          
The following BLAST results are available for this feature:
BLAST of CX054034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
2AAB_MOUSE3.249e-7457.85Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_CAEEL5.935e-6854.73Probable serine/threonine-protein phosphatase PP2A... [more]
2AAA_DICDI3.847e-6753.56Serine/threonine-protein phosphatase 2A regulatory... [more]
2AAA_SCHPO1.084e-6153.16Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAA_YEAST3.272e-5045.18Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAA_PEA7.110e-2183.93Protein phosphatase PP2A regulatory subunit A (Fra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9G12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9G12-M24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054034 ID=CX054034; Name=CX054034; organism=Citrus sinensis; type=EST; length=837bp
TTGGATCCCTCTCTACATTTTCACCACTCCGTCACCAGATCGAGCACTTC
GCTGAAGCCTCTCAAGCTGCGAGATCTTGTGAGCCAAGATGGCAATGATA
GATGAACCACTATATCCGATTGCGGTTTTAATTGACGAGCTTAAGAATGA
TGACATACAGCTTCGTTTGAACTCGATTCGGCGACTCTCTACGATAGCTC
GTGCATTGGGAGAGGAGAGGACACGGAAGGAGTTGATACCATTTTTAAGT
GAAAACAATGACGATGATGATGAAGTGCTTCTTGCAATGGCAGAAGAATT
GGGGGTTTTCATTCCTTATGTTGGTGGTTTGGAGTATGCAAATGTGTTGC
TTCCACCACTGGAGACTTTGTGCACAGTTGAAGAGACTTGTGTCAGGGAC
AAAGCAGTGGAGTCATTGTGTAGAATTGGTTCCCAGATGAGGGAACAAGA
TGTGATTGAGCATTTTATCCCATTAGTGAAGAGGCTGGCTGCTGGCGAGT
GGTTTACAGCTCGGGTTTCATCATGTGGTTTGTTTCATGTTGCTTACCCA
AGTGCTCCAGAAGCACTGAAAACTGAACTACGAACAATATACAGGCAGCT
GTGTCAAGATGACATGCCCATGGTTAGGAGATCTGCAGCAACAAATCTTG
GAAAATTTGCTGCTACTGTTGAAGCTGCCCATTTGAAGTCTGAAATCATG
TCTATTTTTGAGGAACTTACACAGGATGATCAAGATTCTGTGCGATTGTT
GGCTGTTGAGGGTTGTGGAGCTCTAGGAAAGTTGTTGGAACCCCAGGATT
GTGTGGCACATATTCTTCCTGTTATAGTTAATTTCTC
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