CX054033

Overview
NameCX054033
Unique NameCX054033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4269 contig Csv1_Contig4269:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_MOUSE (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 5.369e-70
Identity = 132/223 (59.19%), Postives = 172/223 (77.13%), Query Frame = -2
Query:  223 TIEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 891
            TIE LLP+FL+ LKDE P+VRLNIIS L  VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:  361 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583          

HSP 2 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 56/217 (25.81%), Postives = 104/217 (47.93%), Query Frame = -2
Query:  244 QLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 882
            +++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    L   +G       L       +KD    +R AA++ VK   E    D      M  I+P + E++++ +   +  +   I  L+P++G + T   LLP+ +   KD  P ++ N+   L  +  ++    + +S+ P +VEL+ED    VR
Sbjct:  204 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 420          
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_HUMAN (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4)

HSP 1 Score: 264.618 bits (675), Expect = 5.369e-70
Identity = 132/223 (59.19%), Postives = 172/223 (77.13%), Query Frame = -2
Query:  223 TIEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 891
            TIE LLP+FL+ LKDE P+VRLNIIS L  VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:  361 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583          

HSP 2 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 56/217 (25.81%), Postives = 104/217 (47.93%), Query Frame = -2
Query:  244 QLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 882
            +++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    L   +G       L       +KD    +R AA++ VK   E    D      M  I+P + E++++ +   +  +   I  L+P++G + T   LLP+ +   KD  P ++ N+   L  +  ++    + +S+ P +VEL+ED    VR
Sbjct:  204 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 420          
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_SCHPO (Protein phosphatase PP2A regulatory subunit A OS=Schizosaccharomyces pombe GN=paa1 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.322e-68
Identity = 132/228 (57.89%), Postives = 174/228 (76.32%), Query Frame = -2
Query:  220 TIEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV----DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 891
            T E LLP+FL LLKDE P+VRLNIISKL  VN+V+GI+LLSQSLLPAIV LAED+ WRVRLAII+YIPLLA QLGV FF++K+G LCM WL+D VYSIR+AA  N+++L E FG +WA + I+P+ L M ++P+YLYRMT + AIS +AP + +E+   Q+LP +     D +PNI+FNVAK  + L P++    D +V E+ I P L +L++D D DV++FATQAL+
Sbjct:  359 TTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLLEQLTKDNDPDVQYFATQALE 586          

HSP 2 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 59/216 (27.31%), Postives = 99/216 (45.83%), Query Frame = -2
Query:  244 IEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 888
            I++ +P+F SL  D+   VRL     +  + +V+  D  +   LL  +     D  WR R  +      LA  +G     D+L    +  +KD    +R A A  +    E       ++ I+P + E+IN+P    R  +   I  LAP +G E T   LLP+ +   KD  P ++ N+   L+ +  +V   ++ +S+ P +V L+ED    VR
Sbjct:  203 IDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVR 418          
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_DROME (Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=1 SV=4)

HSP 1 Score: 254.603 bits (649), Expect = 5.556e-67
Identity = 130/223 (58.30%), Postives = 163/223 (73.09%), Query Frame = -2
Query:  223 TIEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 891
            T+EQLLP+FL  LKDE P+VRLNIIS L  VN VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+P LA QLG  FFD KL  LCM WL D VY+IR+AA  N+K+L E+FG  WA Q I+P +L M  N +YL+RMT L  +++LA V G++IT   LLP V+  + D V N++FNVAK LQ + P ++ SV++  ++P L +L+ D DVDV+ FA QA+
Sbjct:  363 TVEQLLPLFLIQLKDECPEVRLNIISNLDCVNDVIGIQQLSQSLLPAIVELAEDSKWRVRLAIIEYMPALAGQLGQEFFDQKLRGLCMGWLNDHVYAIREAATLNMKKLVEQFGAPWAEQAIIPMILVMSRNKNYLHRMTCLFCLNVLAEVCGTDITTKLLLPTVLLLAADPVANVRFNVAKTLQKISPFLEASVIDAQVKPTLDKLNTDTDVDVKHFAAQAI 585          

HSP 2 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 58/216 (26.85%), Postives = 100/216 (46.30%), Query Frame = -2
Query:  244 LLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ----HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 879
            L+P F+ L +D+   VRL  +     + Q++  D +   +LP + + A D  WRVR  + E    L   +G       L       LKD    +R A A  VK           +Q     I+P V +++++P+   +  +   I  L+P++G+  T  QLLP+ +   KD  P ++ N+   L  +  ++    + +S+ P +VEL+ED    VR
Sbjct:  207 LIPNFVQLAQDDQDSVRLLAVEACVSIAQLLPQDDVEHLVLPTLRQCASDSSWRVRYMVAEKFVDLQKAVGPEITRVDLVPAFQYLLKDAEAEVRAAVATKVKDFCANLDKVNQVQIILSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGAYQTVEQLLPLFLIQLKDECPEVRLNIISNLDCVNDVIGIQQLSQSLLPAIVELAEDSKWRVR 422          
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_YEAST (Protein phosphatase PP2A regulatory subunit A OS=Saccharomyces cerevisiae GN=TPD3 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.372e-57
Identity = 116/239 (48.54%), Postives = 165/239 (69.04%), Query Frame = -2
Query:  202 IEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV----LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 888
            I   LPI L++L+DEFPDVRLNII+ L  VN VIGI+LLS SLLPAI ELA+D +WRVR+AIIEYIP+LA QLG+ FFD +L  LC+ WL D VYSIR+AA NN+KRL E FG DW    I+ ++    L+++ N  ++ R TIL A++ L PV+  ++   QLLP + + + D VPNI+FNVAK    ++ ++ +      ++++ +I P L  L +D DVDV++FA ++L    +++
Sbjct:  397 INNFLPILLNMLRDEFPDVRLNIIASLKVVNDVIGIELLSDSLLPAITELAKDVNWRVRMAIIEYIPILAEQLGMQFFDQQLSDLCLSWLWDTVYSIREAAVNNLKRLTEIFGSDWCRDEIISRLLKFDLQLLEN--FVSRFTILSALTTLVPVVSLDVVTEQLLPFISHLADDGVPNIRFNVAKSYAVIVKVLIKDEAKYDALIKNTILPSLQTLFQDEDVDVKYFAKKSLAECQELL 633          
BLAST of CX054033 vs. ExPASy Swiss-Prot
Match: 2AAA_CAEEL (Probable serine/threonine-protein phosphatase PP2A regulatory subunit OS=Caenorhabditis elegans GN=paa-1 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.202e-53
Identity = 106/225 (47.11%), Postives = 155/225 (68.89%), Query Frame = -2
Query:  217 TIEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 891
            T+ +LLPI++ LL D+ P+VRLNIIS L +VN+VIG   LS SLLPAIV LAED  WRVRLAI++++PLLASQLG  FFD+KL  LC+ WL D V+SIR+A+   +K L ++FG  WA  +IVP++ ++  + +YL RMT L  ++ L+  M  E    +++P+V +  +D VPN++FN AK L+ +   +  S +   ++P L +L +D D DVR+F+ +A  S
Sbjct:  363 TVSELLPIYMQLLNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWRVRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWASTNIVPKMQKLQKDTNYLQRMTCLFCLNTLSEAMTQEQILKEIMPIVKDLVEDDVPNVRFNAAKSLKRIGKNLTPSTLTSEVKPLLEKLGKDSDFDVRYFSEEAKNS 587          

HSP 2 Score: 77.7962 bits (190), Expect = 9.308e-14
Identity = 57/224 (25.45%), Postives = 98/224 (43.75%), Query Frame = -2
Query:  229 IEQLLPIFLSLLKDEFPDVRLNIISKLXQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL----EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQ 888
            IE L      L  DE   VRL  +        ++      + + P ++EL +D+ WRVR  + E +  + + LG       L  +    LKD    +R AA   ++  A     D     I   +L    E++ + + L +  +   I  LAP++G E T S+LLP+ +    D+ P ++ N+   L  +  ++  + +  S+ P +V L+ED    VR    Q
Sbjct:  204 IEGLHSSLTDLHVDEQDSVRLLTVESAIAFGTLLDKANKKKLIEPILIELFDDKSWRVRYMVAEKLIEIQNVLGEDMDTTHLVNMYTNLLKDPEGEVRCAATQRLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGLAPLIGKEQTVSELLPIYMQLLNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWRVRLAIVQ 427          
The following BLAST results are available for this feature:
BLAST of CX054033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
2AAA_MOUSE5.369e-7059.19Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_HUMAN5.369e-7059.19Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_SCHPO1.322e-6857.89Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAA_DROME5.556e-6758.30Serine/threonine-protein phosphatase PP2A 65 kDa r... [more]
2AAA_YEAST1.372e-5748.54Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAA_CAEEL1.202e-5347.11Probable serine/threonine-protein phosphatase PP2A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9G12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9G12-M24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054033 ID=CX054033; Name=CX054033; organism=Citrus sinensis; type=EST; length=892bp
TTTTTTTTTTTTTTTTTGGAGAAGGGATGAAAAATACATTCAGATTTCAG
GTTACCAAAAGACAAGGCAAAGTTTGATTACAGTAAAAAACACTAGCAAC
TTAGTAAGACATCAAATACATCTGCATTCTGAATCGGATGAGAAAAATGA
GGAATATGATGATGAAAAATATCTAATTACAACATAAATCTAGCCGGACA
TCATGACCTGATCTTTTGACTGCAGTGCTTGGGTGGCAAAAAATCTGACA
TCAACATCTGGATCCTCACTCAGCTCAACCAAACATGGACGGATTGACTT
CTCCACCACAGACTGATCAACTATGGGAATAAGTGACTGCAACACTTTCG
CTACATTGAATTTGATGTTTGGTACCCTATCTTTTGATGCATTAATGACC
ACAGGCAGAAGTTGTGAACATGTAATTTCAGAGCCCATAACAGGGGCAAG
AAGAGAAATTGCTTGAAGAATAGTCATTCGATACAAATAATGTGGGTTGT
TAATCATTTCCAAAACCTGTGGAACTATATGCTGCATTGCCCAATCAGGG
CCAAATTCTTCTGCCAGACGTTTCACATTGTTGGCAGCAGCATCACGAAT
GGAATAAACCTTATCTTTTAACCATTGCATGCAAAGAGCACCAAGCTTAT
CATCAAAGAACCCTACACCCAACTGACTTGCCAATAGTGGTATGTACTCT
ATTATTGCAAGTCGAACCCTCCAGTGTCTATCCTCTGCAAGCTCAACAAT
TGCTGGCAATAGAGATTGGGACAGCAGGTCAATTCCAATCACCTGGTTGA
CTTGATNCAGCTTGCTAATAATATTCAGTCGGACATCAGGAAATTCATCC
TTTAGAAGAGAAAGGAAAATAGGGAGCAGTTGCTCTATTGTT
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