CX054029

Overview
NameCX054029
Unique NameCX054029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  384 VQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR 770
            VQKD EEG+ K          +VKV+MDG    RKVDL  ++SY+ L+ AL  MF+  +IG C S       N  KL+D  N ++Y  TYED+DGDWMLVGDVPW+MFV S KRLRIM+ S+A GL  R
Sbjct:  149 VQKDKEEGEKKGRV-----AGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT----NSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = -3
Query:  384 VQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR 770
            VQKD EEG+ K          +VKV+MDG    RKVDL  ++SY+ L+ AL  MF+  +IG C S       N  KL+D  N ++Y  TYED+DGDWMLVGDVPW+MFV S KRLRIM+ S+A GL  R
Sbjct:  149 VQKDKEEGEKKGRV-----AGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNT----NSLKLLD--NSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQR 266          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.952e-25
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = -3
Query:  384 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA--IGLAPR 707
            +VKVSMDGAP+LRK+DL L+K Y +L+ AL K+F        G  GM + +  +      + S++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK S+A   GL P+
Sbjct:   88 YVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLF--------GCYGMVEALKNA------DNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPK 183          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.680e-25
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  396 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCG-SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIG 707
            ++KVSMDGAPYLRK+DL L+K Y EL+ AL K+F       CG  + +KD  N           ++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK S+A G
Sbjct:   77 YMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDC-----CGIEEALKDAEN----------CEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.653e-24
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  396 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIG 707
            +VKVSMDGAP+LRK+DL ++K Y +L+ AL K F  + I     + +KD  N          +++VP YEDKDGDWMLVGDVPW+MF +SCKRLRIMK S+A G
Sbjct:   81 YVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGI----CEALKDAEN----------AEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.809e-24
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  384 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA--IGLAPR 707
            +VKVSMDGAP+LRK+DL ++K Y +L+ AL K+F        G  GM + +        +   ++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK ++A   GL P+
Sbjct:   87 YVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLF--------GCYGMVEALKN------VENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPK 182          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.071e-23
Identity = 61/131 (46.56%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  402 SFRKNIMAVQKDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA 794
            +F +   A     + GD K          +VKVSMDGAPYLRKVDLK+ K Y+EL +AL  +F+      C S    D  ++ +         +   YEDKDGD MLVGDVPW+MF+ SCK+LRIMKGSEA
Sbjct:  102 TFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTK-----CFSATASDGCSDGQ---------FAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.399e-23
Identity = 60/113 (53.10%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  375 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL-APRAVE 710
            + VKVSMDGAPYLRK+DL++YK Y+EL +AL  MF  F                S   D  N S++  TY+DKDGD MLVGDVP+DMF  +CK+LRIMK SEA GL +PR ++
Sbjct:  129 SLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCF----------------SGAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.827e-23
Identity = 62/130 (47.69%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  375 KDNEEGDNKAXXXXXSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE 764
            KD+E  D          V F+KV+MDG    RKVDL  + SY+ L+  L  MF     G  G      F    +L+D    S++V TYEDK+GDWMLVGDVPW MF++S KRLR+MK SEA GLA R  E
Sbjct:  112 KDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQ--FTKPLRLLD--GSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE 237          
BLAST of CX054029 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.386e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  372 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGS-DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 713
            + FVKV+MDG    RKVD++ + SY+ L+  L +MF   T   C          + K + LL+GS D+V TYEDK+GDWMLVGDVPW MF++S KRLRIM  SEA GLAPR  E+
Sbjct:  124 LGFVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTC--------REKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          
The following BLAST results are available for this feature:
BLAST of CX054029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA10_ORYSJ6.710e-2651.94Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI6.710e-2651.94Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
AUX22_SOYBN1.952e-2554.55Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA6_PEA5.680e-2557.14Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
AX22C_PHAAU1.653e-2454.81Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
AX22A_PHAAU4.809e-2451.82Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
IAA24_ORYSJ1.071e-2346.56Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA12_ORYSJ1.399e-2353.10Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA13_ARATH1.827e-2347.69Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA12_ARATH2.386e-2352.17Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_9G09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-9G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX054029 ID=CX054029; Name=CX054029; organism=Citrus sinensis; type=EST; length=796bp
TTTTAAAATAAATAATAAGATATTATTATTATTATTGGACAAGTCATAGA
CAATAAACTCAAGTTACAGAAGTGGGAAGTTGGAGACTTATAAACATGTT
CTAAGAATATTAATTATTGCTTCTTGTCACTAAACAAATCTCTCTCAGAA
TATATTCCAACTCTCTACTAATTACTAACATTTTAAAAACAAAAACCCAA
AAAAGAGAAAAGAAAAAAAAAAACGCATGATACATAAGCACATCCAAACT
CTCCCTGCTTGATTCCTCAACAAGCCGGTTTGCCCTTTTGGTTTTGAAAT
CAGCTTTTTTAACAAGCTGCTTTTGGCAAAAAGTTGCTGATCATAATCAA
TCTTCAGCTTCTGTTCTTGCACTTCTCAACTGCCCTTGGTGCAAGTCCAA
TGGCCTCGGATCCTTTCATTATTCTTAAGCGTTTGCATGAATCAACAAAC
ATATCCCATGGTACATCACCAACAAGCATCCAATCTCCATCTTTGTCTTC
ATAAGTAGGTACATAATCTGAGCCATTCAAAAGATCAATCAGTTTGCTCT
CATTCATAAAATCCTTCATCCCTTGAGACCCACAGTTACCAATGGTGAAA
GAGCTGAACATTTTGCCAAGGGCATCAGAGAGTTCTTGGTAGCTTTTGTA
TAGCTTCAAGTCAACCTTGCGCAAGTATGGGGCACCATCCATGCTCACTT
TAACAAAAGCTACATTGCTGCTGCTGCTGCTGCTAGCCTTATTATCACCT
TCTTCATTGTCCTTTTGGACGGCCATGATGTTCTTTCTGAATGATC
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