DR403745

Overview
NameDR403745
Unique NameDR403745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 76/239 (31.80%), Postives = 118/239 (49.37%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK++ T  +                K  A+T   +F     +DK   ERERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD     ++++       L+ A+D  I  P+R +DKP  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDQIDKAPEERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDSIPIIPGSALKALEGD-----TSDIGEGAILKLMAAVDEYIPTPQRATDKPFLMPVEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 82/240 (34.17%), Postives = 123/240 (51.25%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T         I K + ++F         R+F     +D    ER+RGITI+I+  +++T + +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPDL---NESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELIELVEMEVRELLAAQDFD-EEAPVVRVSALKALEGDP--------KWVKSVEELMEAVDASIPDPVRETDKPFLMPVEDV 219          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_CLONN (Elongation factor Tu OS=Clostridium novyi (strain NT) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 73/236 (30.93%), Postives = 114/236 (48.31%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+TTT  +   L       ++ +E                +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L + G++ ++ P V  S  +     +    LD      L+ A+D  I  P+R +D+P  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTTTAAITMTLAKAGGAEVQNYED---------------IDKAPEEKERGITINTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVNHIVVFLNKADQVD---DPELLELVEMEVRELLSEYGFDGDECPVVVGSALKAIEEGDDQCILD------LMKAVDEYIPTPERATDQPFLMPVEDV 216          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_THEAQ (Elongation factor Tu OS=Thermus aquaticus GN=tuf PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 81/243 (33.33%), Postives = 116/243 (47.74%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV------PISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+N+  I  VD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET + + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +       +     +   +R  N +W  K   LLDA+D  I  P R  DKP  +P++DV
Sbjct:   12 HVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGEN-EWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDV 229          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 79/242 (32.64%), Postives = 116/242 (47.93%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE---GDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D        A  + +  EV   L + G+   +VP +  S  +   G    E++ N        L+DA+DN I  P R +DKP  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTSLTAAITTVLAKTGGAKATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPML-------QTREHILLAKQVGVPAMVVFLNKVDVVD---DPALLELVEMEVRDLLLQYGFPAYEVPIIKGSALQALAGKPEGEKAIN-------ELMDAVDNYIPHPVRATDKPFLMPIEDV 218          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 80/239 (33.47%), Postives = 114/239 (47.70%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L           EK  A+    S      +D    E+ERGITI+ A  ++ET + +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P V    +   EGD   +            L+D +D  I  P+R +DKP  +P++DV
Sbjct:   13 HVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKALEGDKEAQEQI-------LKLMDTVDEYIPTPERQTDKPFLMPVEDV 219          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_LACBA (Elongation factor Tu OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=tuf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 81/239 (33.89%), Postives = 119/239 (49.79%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  +D GK+T T         I K + ++   +A +       YA + D    ERERGITI+ A  ++ET + +   IDAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           L+D +D+ I  P+R +DKP  +P++DV
Sbjct:   13 HVNIGTIGHIDHGKTTLTA-------AITKVLADKGLAKAED-------YADI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDEEQEKVI-------LHLMDVVDDYIPTPERENDKPFLMPVEDV 219          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDV 220          
The following BLAST results are available for this feature:
BLAST of DR403745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STIAU7.640e-2331.80Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_MYCS27.640e-2334.17Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]
EFTU_CLONN7.640e-2330.93Elongation factor Tu OS=Clostridium novyi (strain ... [more]
EFTU_THEAQ9.978e-2333.33Elongation factor Tu OS=Thermus aquaticus GN=tuf P... [more]
EFTU_RICAH9.978e-2332.64Elongation factor Tu OS=Rickettsia akari (strain H... [more]
EFTU_LACH49.978e-2333.47Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACBA9.978e-2333.89Elongation factor Tu OS=Lactobacillus brevis (stra... [more]
EFTU_CLOBM9.978e-2332.77Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBL9.978e-2332.77Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK9.978e-2332.77Elongation factor Tu OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246C06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403745 ID=DR403745; Name=DR403745; organism=Citrus sinensis; type=EST; length=720bp
CGGCCGGGGAGACTCACATCAACATTGTNNNCATCNNNNATGTCGACTCT
GGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGA
CAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGACGAACAAGA
GGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAA
CGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTA
CTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACA
TGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCT
ACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGA
GCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCT
GTAACAAGATGGATGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGAT
GAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCC
CGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGA
TTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGAT
GCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCG
TCTGCCACTCCAGGACGTGT
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