DR403745

Overview
NameDR403745
Unique NameDR403745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_RICFE (Elongation factor Tu OS=Rickettsia felis GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 75/242 (30.99%), Postives = 116/242 (47.93%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +DK   +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKLFLMPIEDV 218          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPN (Elongation factor Tu OS=Mycoplasma pneumoniae GN=tuf PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 73/238 (30.67%), Postives = 116/238 (48.74%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQD 716
            H+N+  I  +D GK+T T  +   L    K    R+++               +DK   E+ RGITI+ A  ++ + + +   +D PGH D+IKNMITG +Q D A+L++ +T        S   QTREH LLA  +GV +M+   NK D  T +  +   + + +EV   L   G++ +  P +    +   EGD   E   +        L++A+D  I  P+R  DKP  L ++D
Sbjct:   12 HVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-------SVMPQTREHILLARQVGVPRMVVFLNKCDIATDEEVQ---ELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAKIH-------DLMNAVDEWIPTPEREVDKPFLLAIED 217          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 78/242 (32.23%), Postives = 119/242 (49.17%), Query Frame = 3
Query:    9 ETHINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            + H+NI  I  +D GK+T T  +   L              A +   ++ KY  + DK   E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QTREH LLA  +GV +M+   NK D      S A   ++V+ EV   L   G++ +  P +    +   EGD   E        K   L+ ++D+ I  P R +DKP  L ++DV
Sbjct:   10 KAHVNIGTIGHIDHGKTTLTAAICTYL--------------AKKGGAKAMKYDEI-DKAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTREHILLARQVGVPKMVVFLNKCDMV----SDAEMQDLVEMEVRELLSSYGFDGDNTPVIRGSALKALEGDATWEA-------KIDELMASVDSYIPTPTRDTDKPFLLAVEDV 218          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 78/239 (32.64%), Postives = 121/239 (50.63%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T         I K + +++    EA+  ++        +D    E+ RGITI+I+  +++T + +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D    +      +  V+E+ S     G N   V    +   EGD         +W K    L+DA+D +I +P R ++KP  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTA-------AITKVLHDKYPDLNEASAFDQ--------IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDMVDDEELLELVEMEVRELLSSQDFDGDNAPVVRVSALKALEGD--------AEWGKTVADLMDAVDESIPDPVRETEKPFLMPVEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_MACCJ (Elongation factor Tu OS=Macrococcus caseolyticus (strain JCSC5402) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 77/242 (31.82%), Postives = 117/242 (48.35%), Query Frame = 3
Query:    9 ETHINIVXIXXVDSGKSTTTGH----LIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            +TH NI  I  VD GK+T T      L  KLGG                  RS+     +D    E+ERGITI+ +  ++ET + +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK+D       +   + +  EV   L +  +  + VP +  S  +    +E   +    K   L+DA+D  I  P+R SDKP  +P++DV
Sbjct:   10 KTHANIGTIGHVDHGKTTLTAAIATVLSKKLGG----------------EARSYDQ---IDNAPEEKERGITINTSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRNVGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGVEEYED----KIMELMDAVDEYIPTPERDSDKPFMMPVEDV 218          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_GLUDA (Elongation factor Tu OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 75/240 (31.25%), Postives = 114/240 (47.50%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDV 719
            H NI  I  VD GK++ T  +                K  A+T   +FK    +D    ER RGITI  A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           + +  EV   L    +  + +P +  S      +GD  +  +   D      L+DA+D  I +P+RP D+P  +P++DV
Sbjct:   12 HCNIGTIGHVDHGKTSLTAAIT---------------KTLAKTGGATFKAYDQIDAAPEERARGITISTAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKVDQVD---DPELLELVEMEVRELLSAYQFPGDDIPIIKGSALVTLEDGDPEVGENRVRD------LMDAVDAYIPQPERPVDRPFLMPIEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 74/239 (30.96%), Postives = 114/239 (47.70%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD     +  L       L++A+D+ I EP R  DKP  +P++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDV 220          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 74/242 (30.58%), Postives = 118/242 (48.76%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALD-NINEPKRPSDKPLRLPLQDV 719
            H+N+  I  VD GK+T T  + +    +D  V    EK A +           +DK   E+ RGITI+ A  ++ T   + + +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L K  +  + +P +  S  +    ++++      + P       LLDA+D  I  P+R +DK   +P++DV
Sbjct:   12 HVNVGTIGHVDHGKTTLTAAITFTAAAMDPTV----EKLAYDQ----------IDKAPEEKARGITINTAHVEYNTPARHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DEELLELVEMEVRELLSKYEFPGDDLPVIKGSALQALEALQQNPKTARGENPWVDKIWELLDAIDAYIPTPERATDKTFLMPVEDV 229          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 78/243 (32.10%), Postives = 117/243 (48.15%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  I  VD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV  S       +  +  L      W  K   L+DA+D  I  P+RP DK   + ++DV
Sbjct:   12 HVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFVSGSALLALESLSSNPKLMRGEDKWVDKILALMDAVDEYIPTPERPIDKSFLMAIEDV 228          
BLAST of DR403745 vs. ExPASy Swiss-Prot
Match: EFTU3_STRCO (Elongation factor Tu-3 OS=Streptomyces coelicolor GN=tuf3 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 86/240 (35.83%), Postives = 119/240 (49.58%), Query Frame = 3
Query:   15 HINIVXIXXVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAETNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDV 719
            H+NI  +  VD GK+T T         I K + ER     + T   SF     +D+   E  RGITI+IA  ++ET TR+Y  V D PGH D++KNM+TG +Q D A+L++ +  G          QT EH LLA  +GV  ++   NK DA   + +    D +  EV   L   GY  + VP V +SG    EGD     S          LLDA+D  +  P+R  D P  LP+++V
Sbjct:   12 HLNIGTMGHVDHGKTTLTA-------AITKVLAER--GAGSTTQYVSFDR---IDRAPEEAARGITINIAHVEYETDTRHYAHV-DMPGHADYVKNMVTGAAQLDGAILVVSALDGIMP-------QTAEHVLLARQVGVDHIVVALNKADAGDEELT----DLVELEVRELLTAHGYGGDAVPVVRVSGLKALEGDPRWTASVE-------ALLDAVDTYVPMPERYLDAPFLLPVENV 220          
The following BLAST results are available for this feature:
BLAST of DR403745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICFE4.952e-2230.99Elongation factor Tu OS=Rickettsia felis GN=tuf PE... [more]
EFTU_MYCPN4.952e-2230.67Elongation factor Tu OS=Mycoplasma pneumoniae GN=t... [more]
EFTU_MYCPE4.952e-2232.23Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCA94.952e-2232.64Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_MACCJ4.952e-2231.82Elongation factor Tu OS=Macrococcus caseolyticus (... [more]
EFTU_GLUDA4.952e-2231.25Elongation factor Tu OS=Gluconacetobacter diazotro... [more]
EFTU_GEOUR4.952e-2230.96Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_DEIGD4.952e-2230.58Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU_CYAPA4.952e-2232.10Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU3_STRCO4.952e-2235.83Elongation factor Tu-3 OS=Streptomyces coelicolor ... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246C06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403745 ID=DR403745; Name=DR403745; organism=Citrus sinensis; type=EST; length=720bp
CGGCCGGGGAGACTCACATCAACATTGTNNNCATCNNNNATGTCGACTCT
GGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGA
CAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGACGAACAAGA
GGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAA
CGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTA
CTACTGCACCGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACA
TGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCT
ACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGA
GCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCT
GTAACAAGATGGATGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGAT
GAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCC
CGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGA
TTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGAT
GCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCG
TCTGCCACTCCAGGACGTGT
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