DR403685

Overview
NameDR403685
Unique NameDR403685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNRMCPQGRP 283
            M R R E+KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ G+L  F +SSSM + +++Y +    H N +    +P
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKYNT----HSNNLGKAEQP 82          
The following BLAST results are available for this feature:
BLAST of DR403685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_HUMAN2.948e-1550.00Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN2.948e-1550.00Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA2.948e-1550.00Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN2.948e-1550.00Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MAD22_ORYSJ3.850e-1552.87MADS-box transcription factor 22 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403685 ID=DR403685; Name=DR403685; organism=Citrus sinensis; type=EST; length=764bp
GGGGGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGA
GGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAAT
GGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGT
TGCTCTCATCATTTTCTCCAATAGAGGAGAGCTGTACGAGTTTTGCAGTA
GTTCAAGCATGGTCAAAACGCTTGAGAGGTACAGAAGTGCAACTATGGAG
CACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAG
CAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCA
AAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTG
AGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACA
AGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACA
GTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGAT
ACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTAT
GGGCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCCTTCACGCCTTGGA
ATGTGAACCCACACTGCAAATTGGATACCAGCCTGCGGACCCAATATCGG
TTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCA
TGCTAAGAGAGCGG
back to top