DR403685

Overview
NameDR403685
Unique NameDR403685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:67..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    2 GERKEKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRS 238
            GE +     R R+ ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  G+L++F +S+SM + ++RY S
Sbjct:   13 GEGRAATGKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQF-ASTSMEQIIDRYNS 90          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 38/72 (52.78%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSS-SMVKTLERYR 235
            MGRG++E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  +L+ + S   S+ K  + Y+
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQ 72          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSAT 244
            MGR ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  +L+++ SS  M K L RY   T
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRYTDNT 75          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 39/80 (48.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++   L+++ +S+ M + L +Y   +  H++R
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTEYSEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQN 259
            MGR ++++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  +LY++ +S+ M + L +Y      H++
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTEYNEPHES 78          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 39/80 (48.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++   L+++ +SS M + L +Y   +  H++R
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTEYSEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 39/79 (49.37%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQN 259
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYNEPHES 78          
The following BLAST results are available for this feature:
BLAST of DR403685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD47_ORYSJ5.028e-1551.90MADS-box transcription factor 47 OS=Oryza sativa s... [more]
CMB2_DIACA5.028e-1552.78MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
SRFC_DICDI6.567e-1551.35Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN6.567e-1548.75Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2_DROME8.577e-1549.37Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2B_MOUSE1.120e-1448.75Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
MEF2A_PIG1.120e-1449.37Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403685 ID=DR403685; Name=DR403685; organism=Citrus sinensis; type=EST; length=764bp
GGGGGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGA
GGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAAT
GGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGT
TGCTCTCATCATTTTCTCCAATAGAGGAGAGCTGTACGAGTTTTGCAGTA
GTTCAAGCATGGTCAAAACGCTTGAGAGGTACAGAAGTGCAACTATGGAG
CACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAG
CAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCA
AAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTG
AGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACA
AGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACA
GTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGAT
ACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTAT
GGGCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCCTTCACGCCTTGGA
ATGTGAACCCACACTGCAAATTGGATACCAGCCTGCGGACCCAATATCGG
TTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCA
TGCTAAGAGAGCGG
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