DR403685

Overview
NameDR403685
Unique NameDR403685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.432e-28
Identity = 43/72 (59.72%), Postives = 60/72 (83.33%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRS 238
            M RG+V+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFS++G+L+E  ++ +M   +ERY+S
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQS 72          

HSP 2 Score: 53.9138 bits (128), Expect = 3.432e-28
Identity = 31/100 (31.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  247 GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            G  EP    R+ +   ++Q    L+   + LQR  R+  G   G +   +L +LE+ L++ + QIR+T+ Q M   +  L++KE +L EAN+ L++++ E
Sbjct:   77 GQMEPGALQRQQV---AEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 173          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.439e-28
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERY 232
            MGRG++E+KRIEN  +RQVTF+KRR+GLLKKA ELSVLCDAEVA+I+FS  G+L+E+ SS+ M +TL RY
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRY 69          

HSP 2 Score: 48.9062 bits (115), Expect = 4.439e-28
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  316 LKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            LK +   LQ     L G+ L PL  KEL+SLE+QL  +L  +R  + + + + L E + KEQ     N+TL++++ E
Sbjct:   90 LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQE 166          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.440e-28
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERY 232
            MGRG++E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  G+L+EF SS+SM KTL RY
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRY 69          

HSP 2 Score: 45.4394 bits (106), Expect = 4.440e-28
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  316 LKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            LK     LQ    ++ G+ L  L+ KEL+ LE+QL+ SL  +R  +   +   L E + KEQ     N+TL++++ E
Sbjct:   97 LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQE 173          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.834e-28
Identity = 77/146 (52.74%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQ--NRMCPQGRPWS*VASKNI*SLKHDMKPYRDPKGISLEKNLAL*TAKSLSHLKGSLICH*SRSDQQE 454
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RG+LYEF  S+ + KTLERY+      Q  N    + + W    SK    LK   +  +  +   L ++L   + K L  L+  L C  S++ Q++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMSK----LKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRK 141          

HSP 2 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 74/184 (40.22%), Postives = 106/184 (57.61%), Query Frame = 1
Query:  232 QKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQLNPSAEDCG----YGLKPAQPQGDSFLHALECEPTLQIGYQ----PADPISV---VTAGPSLNNYMQGWL 747
            Q C Y A + N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N   +  ++   G     G    QP   S   A++ EPTLQIGY     PA+  ++        + NN+M GW+
Sbjct:   70 QHCCYNAQDSNNALSETQ--SWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHS--AAMDSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWV 249          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.911e-25
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLER 229
            M R ++++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ G+L+++ SSSSM + LER
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILER 68          

HSP 2 Score: 51.6026 bits (122), Expect = 1.911e-25
Identity = 28/88 (31.82%), Postives = 45/88 (51.14%), Query Frame = 1
Query:  283 LELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            L+L     Y +L           R + GEEL  LN +EL+ LER L+  L ++   +   ++  + +LQ K   L E N+ L+Q++ME
Sbjct:   86 LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVME 173          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.493e-25
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERY 232
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ G+L+EFC SSSM + LER+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERH 69          

HSP 2 Score: 47.3654 bits (111), Expect = 2.493e-25
Identity = 24/85 (28.24%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  283 LELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 537
            L+L    ++ ++           R + GEEL  L+ +EL+ LE+ L+  L ++  T++  ++  ++ELQ K   L + NK L+Q+
Sbjct:   86 LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.060e-24
Identity = 45/73 (61.64%), Postives = 64/73 (87.67%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCS-SSSMVKTLERYRS 238
            MGRG++E+KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFS+ G+LY++CS  +S+ + LE+Y++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQT 73          

HSP 2 Score: 33.8834 bits (76), Expect = 2.060e-24
Identity = 27/107 (25.23%), Postives = 46/107 (42.99%), Query Frame = 1
Query:  292 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKP 612
            S   E  ++K   + +Q   R+L GE+L  L  KEL  +E  LD  +  +       ++D        +++L + NK L  +L +      + L+ S  D   G  P
Sbjct:   86 SLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDK----LMDHWERHVRTDKMLEDENKLLAFKLHQ----QDIALSGSMRDLELGYHP 184          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.926e-24
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQN 259
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG LYE+ +++S+  T+ERY+ A  +  N
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSN 78          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.739e-24
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYR----------SATMEHQNRMCPQGR 280
            MGRG+V+LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA I+FS +G+LYE+ + S M K LERY           SA  E +   C + R
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYR 96          

HSP 2 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  265 VSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            +SA    E +   EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:   81 ISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-23
Identity = 42/75 (56.00%), Postives = 63/75 (84.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCS-SSSMVKTLERYRSAT 244
            MGRG++E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF N G+++E+CS S+++   L+ Y+  +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTS 75          

HSP 2 Score: 36.5798 bits (83), Expect = 1.694e-23
Identity = 23/76 (30.26%), Postives = 40/76 (52.63%), Query Frame = 1
Query:  313 KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 540
            ++K   + +Q   R+L GE++  LN KEL  LE  L   L  I + ++    + L  ++  +Q+L E +K L+  L
Sbjct:   93 RIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS----EILRMVRKNDQILEEEHKQLQYAL 164          
The following BLAST results are available for this feature:
BLAST of DR403685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD33_ORYSJ3.432e-2859.72MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL15_ARATH4.439e-2868.57Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AGL15_BRANA4.440e-2872.86Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MADS6_ORYSJ8.834e-2852.74MADS-box transcription factor 6 OS=Oryza sativa su... [more]
JOIN_SOLLC1.911e-2562.32MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SVP_ARATH2.493e-2562.86MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MADS2_ORYSJ2.060e-2461.64MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MADS3_ORYSJ5.926e-2468.35MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD15_ORYSJ7.739e-2460.42MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MADS2_PETHY1.694e-2356.00Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403685 ID=DR403685; Name=DR403685; organism=Citrus sinensis; type=EST; length=764bp
GGGGGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGA
GGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAAT
GGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGT
TGCTCTCATCATTTTCTCCAATAGAGGAGAGCTGTACGAGTTTTGCAGTA
GTTCAAGCATGGTCAAAACGCTTGAGAGGTACAGAAGTGCAACTATGGAG
CACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAG
CAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCA
AAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTG
AGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACA
AGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACA
GTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGAT
ACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTAT
GGGCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCCTTCACGCCTTGGA
ATGTGAACCCACACTGCAAATTGGATACCAGCCTGCGGACCCAATATCGG
TTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCA
TGCTAAGAGAGCGG
back to top