DR403685

Overview
NameDR403685
Unique NameDR403685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.698e-23
Identity = 38/70 (54.29%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERY 232
            MGR +VE+KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  G+LY+  S  +M K ++RY
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRY 70          

HSP 2 Score: 43.5134 bits (101), Expect = 1.698e-23
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 1
Query:  277 EALELSSQ-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 540
            EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E N+TL  ++
Sbjct:   79 EALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQV 164          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.731e-23
Identity = 43/71 (60.56%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCS-SSSMVKTLERY 232
            MGRG++E+KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ G+++EFCS S+++V  L+ Y
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHY 71          

HSP 2 Score: 33.8834 bits (76), Expect = 3.731e-23
Identity = 19/81 (23.46%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  304 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 546
            E  ++K   +++Q   R+L GE++  LN KEL  LE  L+     +++ + ++    +  ++   +++ E N++L+ +L +
Sbjct:   90 EINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQFKLRQ 166          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.060e-22
Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTL 223
            M RG++++KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ G+L+EF S S   K L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQL 67          

HSP 2 Score: 39.6614 bits (91), Expect = 3.060e-22
Identity = 23/77 (29.87%), Postives = 41/77 (53.25%), Query Frame = 1
Query:  298 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 528
            Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E ++ L
Sbjct:   88 QEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNL 164          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.728e-22
Identity = 39/70 (55.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERY 232
            M R R E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ G+L +F +SS+M + +++Y
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKY 69          

HSP 2 Score: 46.595 bits (109), Expect = 6.728e-22
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  283 LELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 540
            + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L+ ++
Sbjct:  105 IHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 193          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.064e-20
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSS------MVKTLERYRS 238
            MGRG++E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ G+L ++C+  +      + + LE+Y++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQT 78          

HSP 2 Score: 31.5722 bits (70), Expect = 2.064e-20
Identity = 22/83 (26.51%), Postives = 40/83 (48.19%), Query Frame = 1
Query:  292 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 540
            S   E  ++K   + +Q   R++ GE+L  L  KEL ++E  L+     +R      M+D     +  E++L + +K L  R+
Sbjct:   91 SLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRV 169          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.487e-20
Identity = 40/74 (54.05%), Postives = 61/74 (82.43%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTL-ERYRSA 241
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  +L+E+ S ++  K L ++Y+ A
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA 74          

HSP 2 Score: 33.113 bits (74), Expect = 3.487e-20
Identity = 27/103 (26.21%), Postives = 48/103 (46.60%), Query Frame = 1
Query:  301 QEYLK-LKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL 606
            QE+LK L      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L            L+ +   ED  +GL
Sbjct:   88 QEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNL-----------VLEFDARREDPHFGL 179          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 46/78 (58.97%), Postives = 64/78 (82.05%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCS-SSSMVKTLERYRSATMEH 253
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ G+++E+CS + S+ + +E+Y+ AT  H
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSH 78          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSS-SSMVKTLERYRSAT 244
            MGRG++E+KRIENK +RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS++G+L+E+CS   SM + + RY   T
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTT 78          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.510e-19
Identity = 45/78 (57.69%), Postives = 63/78 (80.77%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCS-SSSMVKTLERYRSATMEH 253
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ G+++E+CS + S+ + +E Y++ T  H
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTH 78          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 44/74 (59.46%), Postives = 63/74 (85.14%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTL-ERYRSA 241
            MGRG++E+KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ G+ +EFCS S+ +K + +RY+ A
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA 74          
The following BLAST results are available for this feature:
BLAST of DR403685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL31_ARATH1.698e-2354.29Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
GLOB_ANTMA3.731e-2360.56Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS1_PETHY3.060e-2259.70Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD55_ORYSJ6.728e-2255.71MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MADS4_ORYSJ2.064e-2052.56MADS-box transcription factor 4 OS=Oryza sativa su... [more]
DEFA_ANTMA3.487e-2054.05Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
M17_MAIZE3.975e-2058.97MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
FBP24_PETHY3.975e-2062.67MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD29_ORYSJ1.510e-1957.69MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD16_ORYSJ4.395e-1959.46MADS-box transcription factor 16 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403685 ID=DR403685; Name=DR403685; organism=Citrus sinensis; type=EST; length=764bp
GGGGGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGA
GGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAAT
GGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGT
TGCTCTCATCATTTTCTCCAATAGAGGAGAGCTGTACGAGTTTTGCAGTA
GTTCAAGCATGGTCAAAACGCTTGAGAGGTACAGAAGTGCAACTATGGAG
CACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAG
CAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCA
AAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTG
AGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACA
AGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACA
GTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGAT
ACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTAT
GGGCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCCTTCACGCCTTGGA
ATGTGAACCCACACTGCAAATTGGATACCAGCCTGCGGACCCAATATCGG
TTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCA
TGCTAAGAGAGCGG
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