DR403685

Overview
NameDR403685
Unique NameDR403685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTL-ERY----RSATMEHQNR 262
            MG+G++E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++G+L++FCS   ++  L  RY    R+  ++  NR
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNR 85          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 37/67 (55.22%), Postives = 56/67 (83.58%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTL 223
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  +L+E+ S ++  K +
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEI 67          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSS--SMVKTLERYRSAT 244
            MGRGR E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  G+LY F S +  S+ + +ERY + T
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATT 76          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
BLAST of DR403685 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   23 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGELYEFCSSSSMVKTLERYRSATMEHQNR 262
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M K L +Y      H++R
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESR 79          
The following BLAST results are available for this feature:
BLAST of DR403685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD30_ORYSJ2.666e-1649.41MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AP3_ARATH4.548e-1655.22Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MEF2D_XENLA1.323e-1550.00Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.323e-1550.00Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.323e-1550.00Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.323e-1550.00Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MAD32_ORYSJ2.257e-1556.58MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2C_PONAB2.948e-1550.00Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG2.948e-1550.00Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE2.948e-1550.00Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241P06 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241P06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403685 ID=DR403685; Name=DR403685; organism=Citrus sinensis; type=EST; length=764bp
GGGGGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGA
GGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAAT
GGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGT
TGCTCTCATCATTTTCTCCAATAGAGGAGAGCTGTACGAGTTTTGCAGTA
GTTCAAGCATGGTCAAAACGCTTGAGAGGTACAGAAGTGCAACTATGGAG
CACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAG
CAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCCA
AAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTG
AGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAACA
AGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAACA
GTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGAT
ACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTAT
GGGCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCCTTCACGCCTTGGA
ATGTGAACCCACACTGCAAATTGGATACCAGCCTGCGGACCCAATATCGG
TTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCA
TGCTAAGAGAGCGG
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