DR403674

Overview
NameDR403674
Unique NameDR403674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.581e-39
Identity = 83/159 (52.20%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  175 SSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGES-IFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKE-DYRKMVQKQY 645
            +SK   S+   VD  SVT+RL+ ELMSLMMS    G+SAFP+ +S +  W GTI G   T YEGL +K+S+ FP +YP+ PP + F +  +HPNVD  GNICLDIL+DKWS+ Y+ +TILLS+QSLLGEPN  SPLN+ AA L +    +Y++++ ++Y
Sbjct:   13 NSKNSSSAGMAVDGHSVTKRLRSELMSLMMSNTP-GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRY 170          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.385e-35
Identity = 78/143 (54.55%), Postives = 102/143 (71.33%), Query Frame = 1
Query:  223 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFT-WIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLN-NKEDYRKMVQKQY 645
            VT+RLQ EL+ L+ S  +  +SAFP  ++  T W+G I G K T Y GL +K+SL FP +YPF PP +KF +  +HPNVD+ GNICLDIL++KWS+ Y+  TILLS+QSLLGEPN  SPLN+ AA L + + E+YRK V   Y
Sbjct:    9 VTKRLQNELLQLLSSTTE-SISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACY 150          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 69/142 (48.59%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 639
            T   +RL ++   L       GVS  P  ++I TW   I G + T +E  ++KLSL F  +YP KPP VKF +  FHPNV   G+ICLDILQ++WS  YD   IL SIQSLL EPNP SP NS AA L   N+ +Y K VQ+
Sbjct:    3 TPSRRRLMRDFKKLQ-EDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQ 143          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L       GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L       GVS  P   +I  W   I G +GT +E  ++KL++ F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 66/140 (47.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMV 633
            T   +RL ++   L      +GVS  P   +I  W   I G +GT +E  ++KL + F  +YP KPP V+F +  FHPNV   G+ICLDILQ++WS  YD  +IL SIQSLL EPNP SP NS AA L   NK +Y K V
Sbjct:    3 TPARRRLMRDFKRLQ-EDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRV 141          
The following BLAST results are available for this feature:
BLAST of DR403674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC11_SCHPO1.581e-3952.20Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC11_YEAST1.385e-3554.55Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC1_CAEEL8.140e-2848.59Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE3.093e-2747.14Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.093e-2747.14Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT6.891e-2747.14Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT6.891e-2747.14Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE6.891e-2747.14Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN6.891e-2747.14Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN6.891e-2747.14Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241O17 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403674 ID=DR403674; Name=DR403674; organism=Citrus sinensis; type=EST; length=730bp
CGCCGGGGGAAACCAAACAAAATTACAAAAANNNAANNNNGAATCATCTC
ATCGTCATCGTTAATCTTGATTATCGTCATTGATCATCGGCCGTTGATCA
GTGATTCTTCTTTGCTGATCATGGAGGTGCGGCCAAATCCGACGGTTGAA
AATTTACGTGCAACTGCCGCTGCTTCGTCGAAGCAGCCTGTCTCTTCTCC
TAACACCGTCGATAGAACATCCGTTACTCAAAGGCTTCAGAAGGAATTGA
TGTCTCTTATGATGAGTGGAGGTGATCTTGGGGTCTCGGCCTTTCCTGAA
GGCGAGAGCATTTTCACTTGGATTGGCACAATTGAGGGTGGAAAGGGAAC
TATGTATGAGGGTTTATCATACAAACTTTCTTTGCATTTTCCTCTGGATT
ATCCTTTCAAGCCACCCCAAGTCAAGTTTGAAACTATGTGCTTCCATCCA
AATGTCGATCAGTATGGCAACATATGCCTAGACATCCTTCAGGACAAGTG
GTCTTCAGCTTATGATTGCAGAACGATTCTTTTGTCCATTCAAAGTTTAT
TGGGAGAGCCTAATCCAGAGAGCCCTCTCAACAGCTATGCTGCAGCTCTG
TTGAACAATAAGGAAGATTACAGAAAAATGGTCCAGAAACAGTACTTTGC
TGGAGAATTTGAGAGCTAATTTGAACAGCAAAACAGATACAAAATCGGAT
GTTAGGCTTCCACATTATTTCTCTGTAAAG
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