DR403674

Overview
NameDR403674
Unique NameDR403674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5994 contig Csv1_Contig5994:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.131e-24
Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 639
            T   +RL ++    M      GVSA P  +++  W   I G   T YE  +++L L F  +YP KPP VKF +  FHPNV   G ICLDILQ++W+  YD  +IL SIQSL  +PNP SP N  AA L  ++K  Y K V++
Sbjct:    3 TPARRRLMRDFKR-MKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKE 143          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  220 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            S ++R+ KEL  L         SA P G+ ++ W  +I G   + Y G  + LS+HFP DYPFKPP++ F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct:    2 SSSKRIAKELSDLERDP-PTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 639
            T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L +HF   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  S  N  A+ L  +N+++Y K V++
Sbjct:    3 TAARRRLMRDFKR-MQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  226 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +S+HFP DYPFKPP+V F+T  +HPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDPPS-NCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 56/139 (40.29%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  229 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 645
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++   +ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:    4 KRINKELSDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  226 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  217 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQ 636
            T+  +RL ++    M      GVSA P  +++ TW   I G   T +E  ++++ L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YD   IL S+QSLL +PN  SP N  A+ L  ++++ Y K V+
Sbjct:    3 TTARRRLMRDFKR-MQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  226 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 579
            ++R+ KEL  L         SA P  E +F W  TI G   + Y G  + +++HFP DYPFKPP+V F T  FHPN++  G+ICLDIL+++WS A     +LLSI SLL +PNP+ PL
Sbjct:    3 SKRILKELKDLQKDP-PTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 119          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.589e-23
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  136 NPTVENLRATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 639
            N   E   +T      +   S N+   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   19 NQQTEKEGSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of DR403674 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.710e-23
Identity = 62/169 (36.69%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  136 NPTVENLRATAAASSKQPVSSPNTVDRTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 639
            N   E    T      +   S N+   ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  +YPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   19 NQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
The following BLAST results are available for this feature:
BLAST of DR403674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_KLULA7.131e-2443.66Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC4_YEAST9.314e-2445.83Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC2_NEUCR9.314e-2441.55Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC11_ARATH9.314e-2446.61Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D3_BOVIN9.314e-2440.29Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC8_ARATH1.216e-2346.61Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC2_YARLI1.216e-2341.13Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC10_ARATH1.216e-2346.61Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UB2E1_MOUSE1.589e-2336.69Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.710e-2336.69Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241O17 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241O17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403674 ID=DR403674; Name=DR403674; organism=Citrus sinensis; type=EST; length=730bp
CGCCGGGGGAAACCAAACAAAATTACAAAAANNNAANNNNGAATCATCTC
ATCGTCATCGTTAATCTTGATTATCGTCATTGATCATCGGCCGTTGATCA
GTGATTCTTCTTTGCTGATCATGGAGGTGCGGCCAAATCCGACGGTTGAA
AATTTACGTGCAACTGCCGCTGCTTCGTCGAAGCAGCCTGTCTCTTCTCC
TAACACCGTCGATAGAACATCCGTTACTCAAAGGCTTCAGAAGGAATTGA
TGTCTCTTATGATGAGTGGAGGTGATCTTGGGGTCTCGGCCTTTCCTGAA
GGCGAGAGCATTTTCACTTGGATTGGCACAATTGAGGGTGGAAAGGGAAC
TATGTATGAGGGTTTATCATACAAACTTTCTTTGCATTTTCCTCTGGATT
ATCCTTTCAAGCCACCCCAAGTCAAGTTTGAAACTATGTGCTTCCATCCA
AATGTCGATCAGTATGGCAACATATGCCTAGACATCCTTCAGGACAAGTG
GTCTTCAGCTTATGATTGCAGAACGATTCTTTTGTCCATTCAAAGTTTAT
TGGGAGAGCCTAATCCAGAGAGCCCTCTCAACAGCTATGCTGCAGCTCTG
TTGAACAATAAGGAAGATTACAGAAAAATGGTCCAGAAACAGTACTTTGC
TGGAGAATTTGAGAGCTAATTTGAACAGCAAAACAGATACAAAATCGGAT
GTTAGGCTTCCACATTATTTCTCTGTAAAG
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