DR403659

Overview
NameDR403659
Unique NameDR403659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_RICAH (Lipoyl synthase OS=Rickettsia akari (strain Hartford) GN=lipA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTALQL 480
            KKP+W++ KAP    +   K+ + +L LNTVCEEA CPNIGECW+    T + L
Sbjct:    6 KKPDWIKVKAPNSAEYYNTKDLIKNLSLNTVCEEAACPNIGECWSKKHATMIIL 59          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_MESSB (Lipoyl synthase OS=Mesorhizobium sp. (strain BNC1) GN=lipA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  250 DTVKMKPPQRQQMGLHTGRDPDVKKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWN 453
            DTV  KP  R     H      ++KP+W+R KAP  + + E +E + + KL TVCEEA CPNIGECW+
Sbjct:    6 DTVS-KPRPRHPEKAHRPDQEVLRKPDWIRVKAPTSRGYLETREIVKTNKLVTVCEEAGCPNIGECWD 72          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_MARAV (Lipoyl synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=lipA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  319 KKPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTAL 474
            +KP+WLR + P G+R+  V+ +++  +L+TVC+E+ CPNIGECW  G  T +
Sbjct:   42 RKPKWLRARMPGGERYDAVRRNVTEHRLSTVCQESHCPNIGECWTNGTATIM 93          
BLAST of DR403659 vs. ExPASy Swiss-Prot
Match: LIPA_EHRCJ (Lipoyl synthase OS=Ehrlichia canis (strain Jake) GN=lipA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:  322 KPEWLRQKAPQGQRFQEVKESLSSLKLNTVCEEAQCPNIGECWNGGWGTALQL 480
            KP+WL+ K P G  F +++  +   KLNTVCEEA CPN+GECWN    T + L
Sbjct:    4 KPDWLKVKMPTGDTFYQMRNLMKLYKLNTVCEEAACPNVGECWNKKHATVMIL 56          
The following BLAST results are available for this feature:
BLAST of DR403659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
LIPA_RICAH7.813e-1150.00Lipoyl synthase OS=Rickettsia akari (strain Hartfo... [more]
LIPA_MESSB7.813e-1147.06Lipoyl synthase OS=Mesorhizobium sp. (strain BNC1)... [more]
LIPA_MARAV7.813e-1146.15Lipoyl synthase OS=Marinobacter aquaeolei (strain ... [more]
LIPA_EHRCJ7.813e-1150.94Lipoyl synthase OS=Ehrlichia canis (strain Jake) G... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241N15 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241N15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403659 ID=DR403659; Name=DR403659; organism=Citrus sinensis; type=EST; length=520bp
GGGGAAACAGCTATCGACTGAATTGAATTCCAGGCGGAGAAATCGAAGCC
CACGACGCTGAACTAACGCTTACAAAAAAGGGGGAAAATTGAGAAACCAA
ACTTTATTATAAACGAGCTTGAAAATTTTAGCATTTTGTTTCCACAGCCA
GAAAACGAAAACAGCAGAATGATTCATCAAGCGATTTGGAAACCTTCAAA
TTCAATTTCATATTCAATCCCGTCGAAAATCCGGTGCGAGTCAAGAACTG
ACACGGTGAAGATGAAGCCACCACAAAGACAACAAATGGGTCTGCACACG
GGGAGAGATCCGGATGTGAAGAAGCCGGAGTGGCTGAGACAGAAAGCTCC
ACAAGGTCAGAGGTTTCAAGAAGTTAAAGAATCTCTTTCCTCATTGAAAC
TCAACACTGTTTGCGAGGAGGCCCAGTGCCCCAATATTGGAGAGTGTTGG
AATGGAGGGTGGGGGACGGCATTGCAACTGCAACGATCATNNNNCTTGNN
GNNACCTGNNNCCGCGGCTG
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