EY720317

Overview
NameEY720317
Unique NameEY720317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_VIBSL (Thymidylate synthase OS=Vibrio splendidus (strain LGP32) GN=thyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 62/213 (29.11%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTD---REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD N++   L+   L +   + E D+G VYG Q R +        A   G   DQL  +++ + N  +DR  +L+ +NP +  +  L PC     F +    L     QRS D+ LG+ FN+    +   ++A +     G   H + +AH+Y + + P+ + QL++ P   P   INPE K   D++++V+ +DF + GY+ H+ I+   +V
Sbjct:   82 WDANSN---LNEAWLNNPYRKGEDDMGRVYGVQGRAW--------AKPDGGHIDQLKKIVDDLTNGIDDRGEILNFYNPGEFHMGCLRPCMYSHHFSLLGDTLYLNSTQRSCDVPLGLNFNMVQVYVFLAIMAQITGKKAGVAYHKLVNAHIYEDQLAPMRDIQLKREPLAGPTFHINPEIKSLEDLETWVTMDDFWVEGYECHEAIKYPFSV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_SHESH (Thymidylate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=thyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 62/210 (29.52%), Postives = 102/210 (48.57%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD NA+   +       +   D+G VYG Q R +            G   DQL  +++ +K   +DR  +LS +NP +  +  L PC     F +    L    +QRS D+ LG+ FN      L  +IA +    PG   H I +AH+Y + +  + + QL++ P     L INP+ K   D++++V+ +DF++ GY  H+ I+   +V
Sbjct:   82 WDANANENQVWLNNPHRKGVDDMGRVYGVQGRAWSKP--------DGGTVDQLKKIVDNLKAGVDDRGEILSFYNPGEFHMGCLRPCMHTHNFSLLGDTLYLNSFQRSCDVPLGLNFNQVQVYTLLALIAQITGKKPGMAYHKIVNAHIYEDQLALMRDVQLKREPFEPASLSINPDIKSLEDLETWVTMDDFEVSGYQHHEAIKYPFSV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_SHEHH (Thymidylate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=thyA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 60/214 (28.04%), Postives = 102/214 (47.66%), Query Frame = 3
Query:   30 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            D   W  N  R+ +D          D+G VYG Q R +            G   DQL  +++ +    +DR  +LS +NP +  +  L PC     F +    L    +QRS D+ LG+ FN      L  ++A +     G   H I +AH+Y + +  + + Q+++ P   P L INP+ K   D++++V+ +DF++ GY+ H+ I+   +V
Sbjct:   88 DNQAWLNNPHRKGVD----------DMGRVYGVQGRAWSKP--------DGGTIDQLRKIVDDLSKGIDDRGEILSFYNPGEFHMGCLRPCMHTHNFSLLGDTLHLTSFQRSCDVPLGLNFNQVQVFTLLALMAQITGHKAGTAFHKIVNAHIYEDQLELMRDVQIKREPLSSPKLVINPDIKSLEDLETWVTMDDFEVTGYEHHEAIKYPFSV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_HAEPS (Thymidylate synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=thyA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 58/210 (27.62%), Postives = 101/210 (48.10%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD NA+           + E D+G VYG   R+F            G   D L  +++ +K   ++R  + + ++P    +  L PC     F + +G L     QRSAD+ LG+ +N+        ++A +     G   H I +AH+Y + +  + + QL++ P   P LKINP+ K   D++++V+  DF++ GY+ H  I+   +V
Sbjct:   82 WDANANENAAWLTNPHRKGEDDMGLVYGAVGRNF--------PKVGGGSVDLLRQIVDDLKRGVDNRGEIYTFYHPGAFHMGCLRPCLHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHQAGQAFHKIVNAHIYEDQLELMRDVQLKRTPFKAPTLKINPDIKSLEDLETWVTLADFEVEGYEYHPSIQYPFSV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_SHEFN (Thymidylate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=thyA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15
Identity = 60/210 (28.57%), Postives = 97/210 (46.19%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPE---KKDIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD NA+           +   D+G +YG   R F            G   D L  +++ + N  ++R  +L+ ++P    L  L PC     F +    L     QRS D+ LG+ FN+    +L  ++A +    PG   H I +AH+Y + + P+ + QL + P   P L INP+    KDI+++V+ +DF +  Y  H  I+   AV
Sbjct:   82 WDANANENQAWLDNPNRKGPDDMGLIYGALGRAFPKP--------DGGHVDLLQQIVDDLSNGIDNRGEILTFYHPGAFDLGCLRPCMYEHHFSLLGDTLYLNSTQRSCDVPLGLNFNMVQVYVLLALMAQITGHKPGKAYHKIVNAHIYEDQLEPMRDVQLAREPFASPKLIINPKIKTLKDIETWVTLDDFSVEDYQHHDAIKYPFAV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_PSEA6 (Thymidylate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=thyA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 59/210 (28.10%), Postives = 98/210 (46.67%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD NA++          + E D G +YG   R+F            G   D L  +I  +KN  +DR  + + ++P    +  L PC     F + +  L     QRS D+ LG+ FN+     L  ++A +     G   H I +AH+Y + +  + + QL++ P   P L INP+ K   D++++V+ +DF + GY  H  I+   +V
Sbjct:   82 WDANANQNQAWLDNPHRKGEDDCGLIYGKIGRNFPKP--------DGGSIDLLAKIIYDLKNGIDDRGEIFTFYHPGAFHMGCLRPCMYSHHFSLLDDTLYLNSTQRSCDVPLGLNFNMVQVYFLLAIVAQITGKKAGMAYHKIVNAHIYEDQLELMRDVQLKREPLGMPKLIINPDIKSLEDLETWVTMDDFSIEGYAHHPAIKYPFSV 283          
BLAST of EY720317 vs. ExPASy Swiss-Prot
Match: TYSY_HAEDU (Thymidylate synthase OS=Haemophilus ducreyi GN=thyA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 56/210 (26.67%), Postives = 99/210 (47.14%), Query Frame = 3
Query:   42 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPFDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE-QLQKLPKPFPILKINPEKK---DIDSFVS-EDFKLIGYDPHQKIEMKMAV 656
            WD NA++          +   D+G VYG   R F        AD+     D L  +++ + N  ++R  + + ++P    +  L PC     F + +G L     QRSAD+ LG+ +N+        ++A + +   G   H I +AH+Y + +  + + QL++ P   P L INP  K   D++ +V+ +DFK+  Y  H  I+   ++
Sbjct:   82 WDANANQNADWLANPYRKGVDDMGLVYGAIGRKFPK------ADHGS--LDLLKQIVDDLSNGIDNRGEIYTFYHPGAFHMGCLRPCLYSHHFSLLDGTLYLNSTQRSADVPLGLNWNMVQCYTFLALMAQITNHKAGQVFHKIVNAHIYEDQLALMRDVQLKREPFATPTLTINPAIKSLEDLEIWVTLDDFKVENYFYHPSIQYPFSI 283          
The following BLAST results are available for this feature:
BLAST of EY720317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TYSY_VIBSL1.662e-1729.11Thymidylate synthase OS=Vibrio splendidus (strain ... [more]
TYSY_SHESH1.662e-1729.52Thymidylate synthase OS=Shewanella sediminis (stra... [more]
TYSY_SHEHH2.400e-1628.04Thymidylate synthase OS=Shewanella halifaxensis (s... [more]
TYSY_HAEPS5.347e-1627.62Thymidylate synthase OS=Haemophilus parasuis serov... [more]
TYSY_SHEFN2.032e-1528.57Thymidylate synthase OS=Shewanella frigidimarina (... [more]
TYSY_PSEA67.721e-1528.10Thymidylate synthase OS=Pseudoalteromonas atlantic... [more]
TYSY_HAEDU1.233e-1226.67Thymidylate synthase OS=Haemophilus ducreyi GN=thy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-G08-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720317 ID=EY720317; Name=EY720317; organism=Citrus sinensis; type=EST; length=849bp
CACCACGCGTCCGGGTTCTTCAGGAAAAGGATATTCATATATGGGATGGC
AATGCATCCAGGGAATATCTTGATAGTGTTGGTTTGACGGACAGAGAGGA
GGGTGACCTAGGACCTGTATATGGTTTTCAATGGAGGCACTTTGGTGCAA
GGTATACTAACATGCATGCTGACTACTCTGGCCAAGGCTTTGATCAGTTG
CTAGATGTTATTAACAAGATTAAGAATAATCCAAATGATCGGCGGATTGT
ACTCTCGGCTTGGAATCCTTTTGATCTCAAATTGATGGCGCTTCCACCTT
GCCACATGTTTGCTCAGTTCTATGTGGCTAATGGGGAGTTATCATGTCAA
ATGTATCAGCGCTCTGCTGATATGGGCCTGGGTGTGCCGTTTAACATTGC
TTCATATGCCCTCTTGACATGCATGATTGCTCATGTTTGTGATCTTGCTC
CTGGCGATTTCATTCATGTCATTGGTGATGCTCATGTTTATCGCAATCAT
GTCAGGCCTCTGGAGGAACAACTTCAGAAACTGCCAAAGCCTTTTCCAAT
TTTGAAGATCAATCCTGAGAAGAAAGATATAGATTCTTTTGTATCAGAGG
ATTTCAAACTTATAGGTTATGATCCACACCAGAAAATAGAAATGAAAATG
GCGGTATAGATCTCTCTTATAGGTTCAGTAACTCACAGACTCTGGTCCCT
CCTANGCAATAATTGCCAAGTTTTGAGGCACCGCTACTGGAGGCATGTAT
TGACGCCAGAGTTTATACCAATAGCCCATAGAATCTGATTGTNGGGATAA
CTTTTAAATAGTGCATATGTAGTAAGCGGGAATCCTTTANTCCACAGAG
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