CX053710

Overview
NameCX053710
Unique NameCX053710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PNPO_MOUSE (Pyridoxine-5'-phosphate oxidase OS=Mus musculus GN=Pnpo PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 103/177 (58.19%), Postives = 137/177 (77.40%), Query Frame = 2
Query:   59 DPINQFRKWFDDAIAA-GLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            DP+ QF  WFD+A+    + E NAM ++T  +DGKPS+RM+LLKG  +DGF ++TNYESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ ++E+E YFHSRP+ SQIGA+VS+QSSVIP R  L ++ +EL + + D   +PKPE+WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   57 DPMKQFASWFDEAVQCPDIGEANAMCVATCTRDGKPSARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYQDQE-VPKPEYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PNPO_BOVIN (Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=PNPO PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 107/189 (56.61%), Postives = 141/189 (74.60%), Query Frame = 2
Query:   29 PEFLEEQ--VESDPINQFRKWFDDAIAA-GLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            PE  EE      DP+ QF  WF++A+    + E NAM L+T  +DGKPS+RMVLLKG  +DGF ++TN+ESRK  EL  NP ASL+FYW+ L+RQVRVEG V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R  L ++ KELE+ + +   +PKP++WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   45 PEAFEETHLTSLDPVKQFAAWFEEAVQCPDIMEANAMCLATCTRDGKPSARMVLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLHRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNKELEQLYQEQE-VPKPKYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PNPO_RAT (Pyridoxine-5'-phosphate oxidase OS=Rattus norvegicus GN=Pnpo PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 102/177 (57.63%), Postives = 137/177 (77.40%), Query Frame = 2
Query:   59 DPINQFRKWFDDAIAA-GLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            DP+ QF  WF++A+    + E NAM L+T  +DGKPS+RM+LLKG  +DGF ++TNYESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ ++E+E YFHSRP+ SQIGA+VS+QSSVIP R  L ++ +EL + + +   +PKPE+WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   57 DPMKQFASWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNYESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEKEAENYFHSRPKSSQIGAVVSRQSSVIPDREYLRKKNEELGQLYREQE-VPKPEYWGGYILYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_JANMA (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Janthinobacterium sp. (strain Marseille) GN=pdxH PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 101/194 (52.06%), Postives = 137/194 (70.62%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 589
            +R +Y   +  E   + DP+ QF KWF +A+ A + EPNAM++STV  +G+PSSR++L+K  D+ GF W+TNYESRK  EL +NPHA+LLF+W  L R+VR+EG VE+VS  ESEQYF SRP  S++ A+ S QS  +  R  L  QY ++E ++ +    P+PE WGGYRLKP+  EFWQG+ SRLHDR+ YS
Sbjct:    6 IRTDYTQAKLSELDTDPDPVAQFAKWFGEALRAEVPEPNAMSVSTVAANGRPSSRILLIKDFDQRGFTWFTNYESRKGQELAQNPHAALLFHWIPLEREVRIEGRVERVSSAESEQYFQSRPVKSRLSALASSQSHPVADRTALEAQYAKVEAQYGEHP--PRPEHWGGYRLKPDYIEFWQGRASRLHDRIVYS 197          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BURS3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia sp. (strain 383) GN=pdxH PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.360e-55
Identity = 108/194 (55.67%), Postives = 136/194 (70.10%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 589
            LR NY      E  V  DP  QF +WF +A+AA L EPN M L+TVG DG+PS+R+VL+KGVD  GFV++TNYESRK  +L  +P A+LLFYW  L RQVR+EG +EK S EES++YF SRP GS+IGA  S+QS+VI  R  L  Q + + E++ D    P+P  WGGYRL P+  EFWQG+ SRLHDRL Y+
Sbjct:    7 LRINYSRASLDEADVAHDPFAQFDRWFKEALAAKLPEPNTMTLATVGDDGRPSARIVLIKGVDERGFVFFTNYESRKGRDLAAHPQAALLFYWIELERQVRIEGRIEKTSAEESDRYFASRPLGSRIGAWASEQSAVIDSRATLEAQEQAVSERYGDNP--PRPPHWGGYRLVPDSIEFWQGRPSRLHDRLLYT 198          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PNPO_HUMAN (Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN=PNPO PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.776e-55
Identity = 103/177 (58.19%), Postives = 136/177 (76.84%), Query Frame = 2
Query:   59 DPINQFRKWFDDAIAA-GLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            DP+ QF  WF++A+    + E NAM L+T  +DGKPS+RM+LLKG  +DGF ++TN+ESRK  EL  NP ASL+FYW+ LNRQVRVEG V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R  L ++ +ELE+ + D   +PKP+ WGGY L P++ EFWQGQT+RLHDR+ +
Sbjct:   57 DPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVF 232          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BORPD (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pdxH PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.776e-55
Identity = 107/202 (52.97%), Postives = 140/202 (69.31%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEING 607
            S LR++Y     LE+   + P +QF +WFD A+AA + EPNAM L+TV  DG+PS+R+VL+KG D  GF +YTNYESRK  +L  NP A+LLF+W  L RQVR+EG VE+VS EES+ YFHSRP GS+IGA  S+QS  +  R  L  + +E+  ++ +    P+P  WGGYR+ P LFEFWQG+ SRLHDRL+Y P    G
Sbjct:    4 SDLRQSYEKSTLLEDSAAASPFDQFSQWFDQALAAQVPEPNAMTLATVDADGQPSARIVLIKGYDSRGFAFYTNYESRKGHDLLANPRAALLFFWQPLERQVRIEGRVEQVSAEESDAYFHSRPLGSRIGAWASRQSQPVT-RAELEAREQEIRARYGEQP--PRPPHWGGYRVVPTLFEFWQGRPSRLHDRLRYLPDGRGG 202          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_SALRD (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salinibacter ruber (strain DSM 13855) GN=pdxH PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.320e-55
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQY 586
            LR+ Y   E   + V  DPI QFR WFD+A  A L EPNAM L+T   DG PS+R+VLLKG+D  GF +YTNYESRK  +L +NPHA+L+F W  L RQVR+EG+VE++  EES +YFH RPRG+Q+GA  S QS V+  R  L +    ++ ++ D   IP+P  WGGY ++P   EFWQG+ +RLHDRL+Y
Sbjct:    7 LRQEYARAELSRDHVTDDPIEQFRAWFDEAEDAELEEPNAMTLATAATDGTPSARIVLLKGLDDRGFHFYTNYESRKGTDLSQNPHAALVFLWKPLERQVRIEGTVERLPAEESTEYFHRRPRGAQMGAWASPQSRVVDSRADLEENLDTVKAEYGDEDEIPRPSHWGGYVVRPTEVEFWQGRPNRLHDRLRY 199          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_RUBXD (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pdxH PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.957e-55
Identity = 103/196 (52.55%), Postives = 135/196 (68.88%), Query Frame = 2
Query:    2 SALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 589
            + LR  Y      E+  + DPI QF +WF++A+ AGL EPNAM L+T   DG+PS+R VLLKG D  GFV+YTNY  RK+ E+  NP  +LLFYW  L RQVRVEG+  + S+EES+ YF +RPRGSQ+GA  S+QS     R  L ++  ELE +F +   +P+P FWGGYR++PE  EFWQG+ +RLHDRL Y+
Sbjct:   10 AGLRREYTRAGLAEDGADPDPIRQFGRWFEEALRAGLYEPNAMVLATATPDGRPSARTVLLKGFDERGFVFYTNYGGRKSREIEANPRVALLFYWGELERQVRVEGTAGRTSEEESDAYFATRPRGSQLGAWASRQSEPAESREELERRLAELERRF-EGRPVPRPPFWGGYRVRPERIEFWQGRENRLHDRLLYA 204          
BLAST of CX053710 vs. ExPASy Swiss-Prot
Match: PDXH_BURM1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=pdxH PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.957e-55
Identity = 107/194 (55.15%), Postives = 136/194 (70.10%), Query Frame = 2
Query:    8 LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPSSRMVLLKGVDRDGFVWYTNYESRKACELCENPHASLLFYWDGLNRQVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYS 589
            LR NY      E     DP  QF +WF++A+AA L EPN M L+TVG DG+PS+R+VL+KGVD  GFV++TNYESRK  +L  +P+A+LLFYW  L RQVR+EG VEK S EES++YF SRP GS+IGA  S+QS+VI  R  L  + K   E++ D    P+P  WGGYR+ P+  EFWQG+ SRLHDRL Y+
Sbjct:    7 LRINYSRASLDEADAAPDPFAQFDRWFNEALAAKLPEPNTMTLATVGADGRPSARIVLVKGVDERGFVFFTNYESRKGRDLAAHPYAALLFYWIELERQVRIEGRVEKTSAEESDRYFASRPVGSRIGAWASEQSTVIDSRATLEAREKAFSERYGDDP--PRPPHWGGYRVVPDTLEFWQGRPSRLHDRLVYT 198          
The following BLAST results are available for this feature:
BLAST of CX053710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
PNPO_MOUSE2.098e-5658.19Pyridoxine-5'-phosphate oxidase OS=Mus musculus GN... [more]
PNPO_BOVIN2.098e-5656.61Pyridoxine-5'-phosphate oxidase OS=Bos taurus GN=P... [more]
PNPO_RAT1.041e-5557.63Pyridoxine-5'-phosphate oxidase OS=Rattus norvegic... [more]
PDXH_JANMA1.041e-5552.06Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ja... [more]
PDXH_BURS31.360e-5555.67Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bu... [more]
PNPO_HUMAN1.776e-5558.19Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN... [more]
PDXH_BORPD1.776e-5552.97Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_SALRD2.320e-5552.85Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Sa... [more]
PDXH_RUBXD3.957e-5552.55Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Ru... [more]
PDXH_BURM13.957e-5555.15Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_7G02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7G02-N4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053710 ID=CX053710; Name=CX053710; organism=Citrus sinensis; type=EST; length=673bp
ATCAGCTCTACGAGAGAATTATATTTCTCCAGAATTCCTTGAGGAGCAAG
TTGAATCTGACCCCATTAATCAGTTTCGGAAATGGTTTGATGATGCAATT
GCTGCAGGATTGAGGGAACCAAATGCAATGGCTTTATCAACTGTTGGCAA
GGATGGAAAACCCTCATCACGAATGGTATTGCTCAAGGGAGTTGATAGGG
ATGGTTTTGTCTGGTACACCAATTATGAAAGTAGAAAGGCATGTGAATTA
TGTGAAAATCCTCACGCATCTCTTCTTTTCTACTGGGATGGTCTAAATCG
GCAGGTAAGAGTGGAAGGCTCTGTTGAAAAAGTTTCTGATGAGGAATCTG
AGCAGTACTTCCATAGCCGTCCCAGAGGAAGTCAGATTGGAGCAATAGTT
AGCAAACAGAGTTCTGTGATTCCTGGAAGGCATGTTCTGTACCAGCAATA
CAAAGAATTAGAGGAAAAATTCTCTGATTGGAGTTTGATTCCAAAACCAG
AATTCTGGGGAGGATACAGGCTTAAACCAGAGCTTTTCGAATTCTGGCAA
GGACAGACGTCTCGTTTGCATGATAGGTTGCAATATTCTCCTCAGGAAAT
CAACGGANAACGGGATGGCAATTTTTTAGTTTTGCTTAAGAAAGTTTTGC
TGTGTTGGAAGTGCGAAGCTTCA
back to top