DR403609

Overview
NameDR403609
Unique NameDR403609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  378 FGATAIGGCPHGHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            FG   +     G DIV+IPAGVPRKPGM R DLFN+NAGIVK L +G+A  CP A V +I
Sbjct:   58 FGKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVADNCPNACVGII 117          
BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_KLETE (Malate dehydrogenase (Fragment) OS=Klebsiella terrigena GN=mdh PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.676e-13
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK  P+A + +I
Sbjct:   36 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTSPQACIGII 84          

HSP 2 Score: 31.187 bits (69), Expect = 3.676e-13
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  319 TPGVTADISHMDTNAVVRGFLGQ 387
            TPGV  D+SH+ T+  ++GF G+
Sbjct:    6 TPGVAVDLSHIPTDVKIKGFSGE 28          
BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  384 ATAIGGCPHGHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC 533
            A  I  C H   IV+IPAGVPRKPGMTRDDLFN+NAGI+  L + IA+CC
Sbjct:   85 AGGIENCLHNASIVVIPAGVPRKPGMTRDDLFNVNAGIISQLGDSIAECC 134          
BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.170e-12
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 3
Query:  369 TRIFGATAIGGCPHGHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            T   G   +  C  G ++VIIPAG+PRKPGMTRDDLFN NA IV  L +  AK CPKA++ +I
Sbjct:   47 TAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICII 109          

HSP 2 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  232 AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMTL*SFP 435
            A+GGIG+PL++L+K +PL+S L LYD+ +  GV AD+SH++T A V   LG  +L + LTG  +   P
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIP 68          
BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.835e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  378 FGATAIGGCPHGHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            FG   +     G DIV+IPAGVPRKPGM R DLFNINAGIV+ L + +A  CP+A + +I
Sbjct:   58 FGKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAGIVRNLVDSVADNCPEACLCII 117          
The following BLAST results are available for this feature:
BLAST of DR403609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
MDH_IDILO1.963e-1360.00Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_KLETE3.676e-1361.22Malate dehydrogenase (Fragment) OS=Klebsiella terr... [more]
MDHC_YEAST5.711e-1366.00Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]
MDHM_SCHMA2.170e-1255.56Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_PSEA64.835e-1256.67Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241K13 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241K13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403609 ID=DR403609; Name=DR403609; organism=Citrus sinensis; type=EST; length=558bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGACATTGTAATCATTCCCGCTGGTGTTCCTAGGA
AACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTT
AAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAA
CTTGATTA
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