DR403609 | Citrus Genome Database

Overview


Name	DR403609
Unique Name	DR403609
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	558

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.528e-23
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 3

Query:  417 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            D+V+I AGV RKPGM R DLFN+NAGIV+ L E +A+ CPKA++ +I
Sbjct:   71 DVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGII 117

HSP 2 Score: 63.929 bits (154), Expect = 1.528e-23
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   V+GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.988e-23
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKNCPKACIGII 117

HSP 2 Score: 61.6178 bits (148), Expect = 1.988e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.988e-23
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKNCPKACIGII 117

HSP 2 Score: 61.6178 bits (148), Expect = 1.988e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.988e-23
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + IA+ CPKA V +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGII 117

HSP 2 Score: 61.6178 bits (148), Expect = 1.988e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.988e-23
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAAACPKALIGII 117

HSP 2 Score: 62.7734 bits (151), Expect = 1.988e-23
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.587e-23
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV R+PGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:   69 GADVVLISAGVARRPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117

HSP 2 Score: 60.8474 bits (146), Expect = 2.587e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.587e-23
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + ++K CPKA + +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVSKTCPKACIGII 117

HSP 2 Score: 61.6178 bits (148), Expect = 2.587e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_ENTS8 (Malate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.587e-23
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFN+NAGIVK L + +A  CPKA + +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLIQQVATTCPKACIGII 117

HSP 2 Score: 62.7734 bits (151), Expect = 2.587e-23
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTDVKIKGFSGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.587e-23
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3

Query:  411 GHDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            G D+V+I AGV RKPGM R DLFNINAGIVK+L E IA  CPKA + +I
Sbjct:   69 GADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGII 117

HSP 2 Score: 60.4622 bits (145), Expect = 2.587e-23
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGE 61

[Close]

BLAST of DR403609 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-23
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 3

Query:  417 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 557
            D+V+I AGV RKPGM R DLFNINAGIV+ L E +A  CPKA+V +I
Sbjct:   71 DVVLISAGVARKPGMDRSDLFNINAGIVRNLMEKVAATCPKALVGII 117

HSP 2 Score: 62.3882 bits (150), Expect = 2.587e-23
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 387
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGE 61

The following BLAST results are available for this feature:

BLAST of DR403609 vs. ExPASy Swiss-Prot

BLAST of DR403609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155


Match Name	E-value	Identity	Description
MDH_PROMH	1.528e-23	61.70	Malate dehydrogenase OS=Proteus mirabilis (strain ...	[more]
MDH_SHIFL	1.988e-23	63.27	Malate dehydrogenase OS=Shigella flexneri GN=mdh P...	[more]
MDH_SHIF8	1.988e-23	63.27	Malate dehydrogenase OS=Shigella flexneri serotype...	[more]
MDH_ENT38	1.988e-23	65.31	Malate dehydrogenase OS=Enterobacter sp. (strain 6...	[more]
MDH_SHESH	1.988e-23	63.27	Malate dehydrogenase OS=Shewanella sediminis (stra...	[more]
MDH_SALDC	2.587e-23	65.31	Malate dehydrogenase OS=Salmonella dublin (strain ...	[more]
MDH_ECOSE	2.587e-23	61.22	Malate dehydrogenase OS=Escherichia coli (strain S...	[more]
MDH_ENTS8	2.587e-23	61.22	Malate dehydrogenase OS=Enterobacter sakazakii (st...	[more]
MDH_ALISL	2.587e-23	67.35	Malate dehydrogenase OS=Aliivibrio salmonicida (st...	[more]
MDH_SHEDO	2.587e-23	65.96	Malate dehydrogenase OS=Shewanella denitrificans (...	[more]

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Properties


Property Name	Value
Genbank description	CSAC-PNP1241K13 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241K13 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR403609 ID=DR403609; Name=DR403609; organism=Citrus sinensis; type=EST; length=558bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGACATTGTAATCATTCCCGCTGGTGTTCCTAGGA
AACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTT
AAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAA
CTTGATTA