CX053631

Overview
NameCX053631
Unique NameCX053631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_DRANE (Cytochrome c biogenesis protein ccsA OS=Draba nemorosa GN=ccsA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFSVVS  + IY  TFLV  DEI G + SS++G+  T F +TGLL TRW+
Sbjct:    4 STLEHILTHISFSVVSTVLPIYFFTFLVNLDEIIGFFDSSDKGIVITFFGITGLLFTRWI 63          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_BRADI (Cytochrome c biogenesis protein ccsA OS=Brachypodium distachyon GN=ccsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            +TLE ILTHISFS +SI ITI+L   LV E+ GL  SSE+GM AT F +TG L++RW+
Sbjct:    4 ATLEHILTHISFSTISIVITIHLRALLVRELGGLRDSSEKGMIATFFSITGFLVSRWL 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_BARVE (Cytochrome c biogenesis protein ccsA OS=Barbarea verna GN=ccsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            S LE ILTHISFSVVSI +TIY  T LV  DEI G + SS++G+  T F +TGLL TRW+
Sbjct:    4 SILEHILTHISFSVVSIVLTIYFFTLLVNLDEIIGFFDSSDKGIVITFFGITGLLFTRWI 63          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_LEPVR (Cytochrome c biogenesis protein ccsA OS=Lepidium virginicum GN=ccsA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.250e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            S LE ILTHISFSVVSI +TIY +T +V  DEI G + SS++G+  T F +TGLL TRW+
Sbjct:    4 SILEHILTHISFSVVSIVLTIYFLTLVVNLDEIIGFFDSSDKGIVITFFGITGLLFTRWI 63          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_OLIPU (Cytochrome c biogenesis protein ccsA OS=Olimarabidopsis pumila GN=ccsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            S LE ILTHISFSVVSI + IY +T LV  DEI G + SS++G+  T F +TGLL+TRW+
Sbjct:    4 SILEHILTHISFSVVSIVLIIYFLTLLVNLDEIIGFFNSSDKGIIITFFGITGLLLTRWI 63          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_NUPAD (Cytochrome c biogenesis protein ccsA OS=Nuphar advena GN=ccsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            +TLE ILTHISFS++SI I  +L+T  V EI GL   SE+GM AT FC+TGLL+TRW+
Sbjct:    4 ATLEHILTHISFSIISIVIPTHLMTS-VYEIVGLCDLSEKGMIATFFCITGLLVTRWI 60          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_AETGR (Cytochrome c biogenesis protein ccsA OS=Aethionema grandiflora GN=ccsA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.013e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            S LE ILTHISFSVVSI +TIY +T LV  DE  G Y SS++G+  T F +TG L TRW+
Sbjct:    4 SILEHILTHISFSVVSIVMTIYFLTLLVNLDESIGFYYSSDKGIIITFFSITGFLFTRWI 63          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_CRUWA (Cytochrome c biogenesis protein ccsA OS=Crucihimalaya wallichii GN=ccsA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLV--DEIRGLYASSERGMTATAFCLTGLLITRWV 176
            S LE ILTHISFSVVSI +TIY +T LV  DEI G + S ++G+  T F +TGLL TRW+
Sbjct:    4 SILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSLDKGIIITFFGITGLLFTRWI 63          
The following BLAST results are available for this feature:
BLAST of CX053631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CCSA_DRANE1.319e-1161.67Cytochrome c biogenesis protein ccsA OS=Draba nemo... [more]
CCSA_BRADI1.723e-1160.34Cytochrome c biogenesis protein ccsA OS=Brachypodi... [more]
CCSA_BARVE1.723e-1161.67Cytochrome c biogenesis protein ccsA OS=Barbarea v... [more]
CCSA_LEPVR2.250e-1160.00Cytochrome c biogenesis protein ccsA OS=Lepidium v... [more]
CCSA_OLIPU3.838e-1160.00Cytochrome c biogenesis protein ccsA OS=Olimarabid... [more]
CCSA_NUPAD3.838e-1162.07Cytochrome c biogenesis protein ccsA OS=Nuphar adv... [more]
CCSA_AETGR5.013e-1160.00Cytochrome c biogenesis protein ccsA OS=Aethionema... [more]
CCSA_CRUWA6.547e-1160.00Cytochrome c biogenesis protein ccsA OS=Crucihimal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7C01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7C01-F2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053631 ID=CX053631; Name=CX053631; organism=Citrus sinensis; type=EST; length=828bp
TAAACCCAACGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTAGCTGT
CATCCCCCTTTCTGATGAAGCATATAGCCCTCTGATTTCATCGACTAAGA
AGGTTATTAAATAAATTGTAATTCCAATTGAAACGACCGAAAAGGATATA
TGCGTTAATATACGCTCCAAAGTTGAAAATATCATAAAAAAAAAAAAAAA
ATTAAAAGCGAGAATACCTCAAATATACAGAATGGAAATCATAAATTAAA
TTCCTTAGAGCACTTTTTTTGTATATCTTTTTACAGATGCTATGCCGCCA
CTCGGACTCGAACCGAGATGCTCTAGCACTGCTTCCTAAGAGCAGCGTGT
CTACCGATTTCACCATAGCGGCTTGCTCGAAATCATAATACCCTATTATT
AGTCAATCGTCGAGATTGAAAGAGTCTATTTCAATGGATTTTTATTCATC
AATTTGAAATTTGAATGTTTACTAAAAACAAAAAACATTGAAAGGGCTAT
TTAAAGATTCCGCCCCTTCTTTTGTTGTTGTATTTAATTATTTAAGGTTT
CAGTTTTATTTAACTTAACTTTCAGAGTTTCTTCTTTGATAAACTAGAAC
CTTGTAATGGTTGTAACTAAATAGTTCTAACTTCACTCCAGGGAACAACT
CAAAAAGGGTTTCTTTCTTTTTTTTTTTCATTTTTTAGAACTTTTGTGTT
TGTGTTGTCGTAATTTTAGGTTTTTTCTTTTTTTTTTTCACTATTAATTT
GTCCTAGGATTGATCAAATCAATTAGGTATTGGGCTGCACGTATTATAGA
AAATAAAAAAAAAAATTCTTATTGTTTA
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