CX053450

Overview
NameCX053450
Unique NameCX053450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.338e-28
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGV-SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G LVSLSEQ LVDC  +         ++GCNGGLM++AF YI   GG++ EK YPY   D  SC F+K  + A    F+ I   DE +MA  +   GP++V I+A     Q Y  GV + P    + LDHGVL+VG+G+          + YW++KNSWG  WG+ G+ K+   + N CG+ S  S
Sbjct:  196 GVLVSLSEQNLVDCSTKYG-------NNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAID-DSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDE------SGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASS 367          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.747e-28
Identity = 77/186 (41.40%), Postives = 101/186 (54.30%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINA--VWMQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+LVSLSEQ LVDC     PE +     GCNGGLM+ AF+Y+   GG++ E+ YPYT  D   C++     AA  + F  I    ++     V   GP++V I+A     Q Y  G+   P    + LDHGVL+VGYG  G        K YWI+KNSWGE WG+ GY  +   R N CG+ +  S
Sbjct:   43 GKLVSLSEQNLVDCSR---PEGN----QGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEG-------GKKYWIVKNSWGEKWGDKGYIYMAKDRKNHCGIATAAS 214          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.282e-28
Identity = 74/185 (40.00%), Postives = 99/185 (53.51%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+LVSLSEQ LVDC            + GCNGGLM++AF+Y+   GG++ E+ YPY G +  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+   P    K LDHGVL+VGYG  G          +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  156 GKLVSLSEQNLVDCSRP-------QGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG---TDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAAS 330          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 73/186 (39.25%), Postives = 99/186 (53.23%), Query Frame = -3
Query:  341 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVA 892
            GEL+SLSEQ+LVDCD         S + GCNGGLM+ AF++I+K GG+  EKDYPY G  G    F K+    ++  +  + + ++      + + P++V I A     Q Y  G+     CG  LDH V+ VGYGS            YWI++NSWG  WGE GY  I M RN+    S    +A
Sbjct:  187 GELISLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTG-SCGTNLDHAVVAVGYGSENGV-------DYWIVRNSWGPRWGEEGY--IRMERNLAASKSGKCGIA 354          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 72/185 (38.92%), Postives = 106/185 (57.30%), Query Frame = -3
Query:  335 LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 886
            L+ LSEQQLVDCD           D GC+GGL+++A+E I+K GGVE+E DY Y   +   C     K A  V N +  +  +E+++   L   GP+A+ ++AV +  Y GG+   +     L+H VL+VGYG            PYWIIKNSWG ++GE+GY ++  G N CG+ + ++S A +
Sbjct:  170 LIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA-ERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVEN-------NVPYWIIKNSWGSDYGEDGYVRVRRGVNSCGMINELASSAQV 336          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 78/190 (41.05%), Postives = 104/190 (54.74%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKI-AAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRN------VCGVDSMVS 892
            G L SLSEQ+L+DCD         + +SGCNGGLM+ AF+YI+  GG+ +E DYPY   + G C+  K  +    +S +  +  ++D+     + H P++V I A     Q Y GGV     CG  LDHGV  VGYGSS       K   Y I+KNSWG  WGE G+  I M RN      +CG++ M S
Sbjct:  179 GNLSSLSEQELIDCDT--------TFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYL-MEEGICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGK-CGTDLDHGVAAVGYGSS-------KGSDYVIVKNSWGPRWGEKGF--IRMKRNTGKPEGLCGINKMAS 349          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 79/189 (41.80%), Postives = 110/189 (58.20%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDS-GCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVS---NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 892
            G+ +SLSEQQLVDC        +G+ ++ GCNGGL + AFEYI   GG++ E+ YPYTG +G  CKF ++ I   V    N ++ +  E + A  LV+  P++V    V   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WGE+GY+K+ MG+N+CGV +  S
Sbjct:  181 GKGISLSEQQLVDC--------AGAFNNFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTGKNG-ICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTP-------YWLIKNSWGADWGEDGYFKMEMGKNMCGVATCAS 351          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 71/185 (38.38%), Postives = 102/185 (55.14%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYIC-GKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+LVSLSEQ ++DC        S   + GCNGGLM +AFEYI+K  G+  E+ YPY       CKF +  +AA ++++  I + ++    N +   P++V I+A     Q Y  GV     C  + LDHGVL VG G+          + Y+I+KNSWG +WG NGY  +   + N CG+ +M S
Sbjct:  163 GKLVSLSEQNILDCS-------SSFGNEGCNGGLMTNAFEYIIKNNGLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTD-------NGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMAS 333          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.893e-28
Identity = 75/185 (40.54%), Postives = 98/185 (52.97%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+LVSLSEQ LVDC            + GCNGGLM++AF+YI   G ++ E+ YPY  TD  SC +     AA  + F  I   E  +   +   GP++V I+A     Q Y  G+   P    K LDHGVL+VGYG  G          +WI+KNSWG  WG NGY K+   + N CG+ +  S
Sbjct:  156 GKLVSLSEQNLVDCSR-------AQGNQGCNGGLMDNAFQYIKDNGCLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG---TDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.084e-28
Identity = 74/185 (40.00%), Postives = 103/185 (55.68%), Query Frame = -3
Query:  335 LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 886
            L+ L+EQQLVDCD           D GC+GGL+++A+E I+  GGVE+E DYPY       C     K A  V N        ++   +L++H GP+A+ ++AV +  Y GGV   +     L+H VL+VGYG            PYW IKNSWG ++GENGY +I  G N CG+ + ++S A I
Sbjct:  170 LIDLAEQQLVDCDF---------VDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRL-PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMINELASSAQI 336          
The following BLAST results are available for this feature:
BLAST of CX053450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CATL_DROME1.338e-2841.40Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL1_CHICK1.747e-2841.40Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATL1_PIG2.282e-2840.00Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
GCP1_ARATH2.980e-2839.25Germination-specific cysteine protease 1 OS=Arabid... [more]
CATV_NPVSE2.980e-2838.92Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
XCP1_ARATH3.893e-2841.05Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
CYSP3_SOLLC3.893e-2841.80Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CYSP3_DICDI3.893e-2838.38Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL2_BOVIN3.893e-2840.54Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATV_NPVMC5.084e-2840.00Viral cathepsin OS=Mamestra configurata nucleopoly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_6B04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6B04-D7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053450 ID=CX053450; Name=CX053450; organism=Citrus sinensis; type=EST; length=894bp
CTTTTTTTTGAAGTTCTACTATTCTCGAGTTACATAAAAAGAAAATATAA
CATTATAATATTTCTACAAGCCTGCCCAATAAAAAAAGAAAATATTAATA
CCATCTTCAATAACAATTCTGTAGCATGGTTAACTATAAAATAGATAAAT
ATTACATTCTGACATGACATATGCTTAAATATTACAAGAGCATAGAAAGT
TCATGCCTCAGCCCAGGCATGTAGGCATCGTTATAATTGCAGACGGATAT
TTAAAAGGATATCCTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGC
ACAACCTCCATAATGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGAT
GAGACCATGGAGTCGACCCCACAGACATTGCGACCCATGCAGATCTTATA
ATATCCATTCTCTCCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGT
AAGGCTTCTCCTTGAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCC
ACGATAAGCACTCCATGATCCAAATACTTCCCGCAAATGTATGGGCATGA
AACTCCTCCAATATATGTTTGCATCCAAACGGCATTGATACCCACTGCCA
GAGGGCCATGTTTCACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAA
ATAACACTGAAATTAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTT
GCAGGAACCACCGTCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCGCTCAA
CCCCACCAGCCTTGAGTATGTACTCAAAGGCAGAGTTCATTAGCCCACCA
TTGCACCCAGAGTCACATGAACCAGATTCCTCTGGATCACACTCGTGATC
ACAGTCCACAAGCTGTTGCTCACTGAGGCTGACAAGCTCGCCCG
back to top