CX053450

Overview
NameCX053450
Unique NameCX053450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 66/183 (36.07%), Postives = 105/183 (57.38%), Query Frame = -3
Query:  335 VSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 883
            ++LSEQ LV+CD+          ++GC GGLM+ A E IL+ GGV   ++ PY G DG  CK    +++ + S   V+ + E+++   LV +GP++V I+   +  Y  G++      + L+H VL+VGYG          + PYWI+KNSWG  WGE GY+++   +N CG+ +  +S A +
Sbjct:  169 LNLSEQHLVNCDN---------INNGCAGGLMHWALESILQEGGVVSAENEPYYGFDG-VCKKSPFELSISGSRRYVLQN-ENKLRELLVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKN-------DVPYWILKNSWGAEWGEEGYFRVQRDKNSCGMMNEYASSAIL 333          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.410e-24
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+L++LS Q LVDC  E         + GC GG M +AF+Y+ + GG++ E  YPY G D  SC ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C +  ++H VL+VGYG+        K   YWIIKNSWGE+WG  GY  +   + N CG+ ++ S
Sbjct:  157 GKLLALSPQNLVDCVSE---------NYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQD-ESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLAS 325          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 70/181 (38.67%), Postives = 94/181 (51.93%), Query Frame = -3
Query:  365 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNF-SVISSDEDQMAANLVKHGPLAVGINAVWMQ--TYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 892
            G+LVSLSEQ LVDC        S   + GCNGG    A++YI+   G++ E  YPY   D  +C++D   I A VS++    S DE  +   +   GP++V I+A      +Y GGV     C   Y +H V  VGYG+            YWI+KNSWG  WGE+GY K+   R N C +
Sbjct:  148 GDLVSLSEQNLVDCS-------SSYGNQGCNGGWPYQAYQYIIANRGIDTESSYPYKAIDD-NCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDA------NGGDYWIVKNSWGAWWGESGYIKMARNRDNNCAI 314          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 64/182 (35.16%), Postives = 94/182 (51.65%), Query Frame = -3
Query:  356 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSM 892
            G+L+ LS Q L+DC            + GC  G   +AF+Y+L  GG+E E  YPY   +G  C+++    +A ++ F V+   ED +   +   GP+A G++ +    + Y  GV     C  Y++H VL+VGYG  G          YW+IKNSWG+ WG  GY KI   R N C + S+
Sbjct:  167 GKLIPLSVQNLIDCSKP-------QGNRGCLWGNTYNAFQYVLHNGGLEAEATYPYERKEG-VCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGKRWGLRGYMKIAKDRNNHCAIASL 337          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 63/184 (34.24%), Postives = 96/184 (52.17%), Query Frame = -3
Query:  344 LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAG-GVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSV--ISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSV 886
            L  LS QQ++DC +          + GCNGG   +A  ++ K    + ++ +YP+   +G    F  S    ++  +S    S  ED+MA  L+  GPL V ++AV  Q Y+GG+   +      +H VLI G+  +G         PYWI++NSWG +WG +GY  + MG NVCG+   VSS+
Sbjct:  152 LEDLSVQQVIDCSYN---------NYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDKTG-------STPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVSSI 319          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 68/183 (37.16%), Postives = 99/183 (54.10%), Query Frame = -3
Query:  350 VSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLV---KHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 883
            +S SEQQLVDC            ++GC+GGLM +A++Y LK  G+E E  YPYT  +G  C+++K    A V+ +  + S  +    NLV   +   +AV + + +M  Y  G+     C    ++H VL VGYG+ G          YWI+KNSWG  WGE GY ++   R N+CG+ S+ S
Sbjct:  153 ISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVEG-QCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMM-YRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTD-------YWIVKNSWGTYWGERGYIRMARNRGNMCGIASLAS 318          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+L++LS Q LVDC  E         + GC GG M +AF+Y+ + GG++ E  YPY G D  SC ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C +  ++H VL+VGYG+        K   +WIIKNSWGE+WG  GY  +   + N CG+ +M S
Sbjct:  157 GKLLALSPQNLVDCVTE---------NYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQD-ESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQ-------KGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMAS 325          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.597e-24
Identity = 68/185 (36.76%), Postives = 93/185 (50.27%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G L  LS Q L+DC            ++GC  G  + AF Y+LK  G+E E  YPY G DG  C++     +A ++ F  +  +E  +   +   GP++  I+A     + Y GGV     C  Y+ +H VL+VGYG  G          YW+IKNSWGE WG NG+ KI   R N CG+ S  S
Sbjct:  156 GNLTPLSVQNLLDCS-------KSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKDG-PCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQAS 329          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 64/178 (35.96%), Postives = 92/178 (51.69%), Query Frame = -3
Query:  365 LVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG-RNVCGV 886
            L+ LSEQ L+DC          +   GC+GG M  AF+Y+   GG+  E+ YPY G  G  C++     AA V +F  I   E+ +   + K GP++V ++A     Q Y  G+     C + +L+H VL+VGYG  G          +W++KNSWGE WG  GY K+     N CG+
Sbjct:  158 LIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRG-QGRECRYHAENSAANVRDFVQIPGSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEG---EESDGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGI 324          
BLAST of CX053450 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 70/186 (37.63%), Postives = 97/186 (52.15%), Query Frame = -3
Query:  350 GELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVI-SSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 892
            G+L++LS Q LVDC  E D         GC GG M +AF+Y+ K  G++ E  YPY G D  +C ++ +  AA    +  I   +E  +   + + GP++V I+A     Q Y  GV     C    L+H VL VGYG         K K +WIIKNSWGENWG  GY  +   + N CG+ ++ S
Sbjct:  158 GKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQD-ENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ-------KGKKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 326          
The following BLAST results are available for this feature:
BLAST of CX053450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CATV_GVCP3.410e-2436.07Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATK_RAT3.410e-2436.56Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CRUST_PANBO4.454e-2438.67Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATQ_RAT4.454e-2435.16Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATO_HUMAN4.454e-2434.24Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CATLL_FASHE4.454e-2437.16Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATK_MOUSE7.597e-2436.56Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATJ_RAT7.597e-2436.76Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
TEST2_RAT1.296e-2335.96Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATK_PIG1.296e-2337.63Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_6B04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-6B04-D7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053450 ID=CX053450; Name=CX053450; organism=Citrus sinensis; type=EST; length=894bp
CTTTTTTTTGAAGTTCTACTATTCTCGAGTTACATAAAAAGAAAATATAA
CATTATAATATTTCTACAAGCCTGCCCAATAAAAAAAGAAAATATTAATA
CCATCTTCAATAACAATTCTGTAGCATGGTTAACTATAAAATAGATAAAT
ATTACATTCTGACATGACATATGCTTAAATATTACAAGAGCATAGAAAGT
TCATGCCTCAGCCCAGGCATGTAGGCATCGTTATAATTGCAGACGGATAT
TTAAAAGGATATCCTATAATATCTAGGTACAGAAGCTCCACTTGCCTAGC
ACAACCTCCATAATGTCTAGCTTGAGGTTGTATGGATAGCAGCTACAGAT
GAGACCATGGAGTCGACCCCACAGACATTGCGACCCATGCAGATCTTATA
ATATCCATTCTCTCCCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGT
AAGGCTTCTCCTTGAATCTGATCGGGGCGAAACCTGAGGATCCATAGCCC
ACGATAAGCACTCCATGATCCAAATACTTCCCGCAAATGTATGGGCATGA
AACTCCTCCAATATATGTTTGCATCCAAACGGCATTGATACCCACTGCCA
GAGGGCCATGTTTCACCAAATTTGCAGCCATTTGATCTTCATCAGAGGAA
ATAACACTGAAATTAGATACAGCTGCAGCAATTTTGCTTTTGTCAAATTT
GCAGGAACCACCGTCGGTCCCAGTGTAAGGGTAGTCCTTCTCTCGCTCAA
CCCCACCAGCCTTGAGTATGTACTCAAAGGCAGAGTTCATTAGCCCACCA
TTGCACCCAGAGTCACATGAACCAGATTCCTCTGGATCACACTCGTGATC
ACAGTCCACAAGCTGTTGCTCACTGAGGCTGACAAGCTCGCCCG
back to top