DR403413

Overview
NameDR403413
Unique NameDR403413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9848 contig Csv1_Contig9848:9..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.041e-16
Identity = 67/255 (26.27%), Postives = 123/255 (48.24%), Query Frame = 2
Query:   56 IPTIDLGEFPKQ-------LKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGYMAPTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIE--------KYAQAIQELAVDLAHKLAESMGLMDSVFQDWPCQFRI----NKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            IPTIDL             ++K+ +A+E+WG F+V+NH +   ++ +M   +RE  +   E+K+       G     P  K        L+   ++        +    P + E +         +Y++ + +L   L   L+E++GL  +  +D  C   +    + Y   P+   + G+  H+D+ FLTIL  D ++GGL+V+     +V V P+PG L VN+GD+  + +N + ++V+HRV    +  R+S+
Sbjct:   62 IPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKK-------GFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQD-HIGGLQVLHDQ-YWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISV 307          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 65/254 (25.59%), Postives = 121/254 (47.64%), Query Frame = 2
Query:   38 MEERRRIPTIDLG-----EFPKQLKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGYMAPTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGL----MDSVFQDWPCQF---RINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            ME+  + P +DL      E  + +  + +A E WG F +VNH +   LM   +++ +E   + +E K  +     G   +    ++  +E+           + D     D S   R  ++ + + ++ LA DL   L E++GL    +  VF          +++ Y   P+     G++ HTD+G + +L  D+ V GL+++ + G ++ V PL  ++ +NLGD   V +NGR  ++ HRV  ++   R+SI
Sbjct:    1 MEKNIKFPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLEREVEDVDWESTFYLRHLPQSNLYDIP---DMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLL-KDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSI 250          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 76/271 (28.04%), Postives = 122/271 (45.02%), Query Frame = 2
Query:   14 PDKQIKSEMEERRR---IPTIDLGEFPKQLKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIK---RRNTDVIAGSGYMAPTQ-KNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGL------------MDSVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEV---MDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVS 760
            PD  + S+ E       IP I L   P++   LR+A EEWG F + +H VS +L+  +   ++ L  LP+  K    R+ D   G G +  +   + L  + G   M SS          D        +E+Y +A+ +L+  L   L  S+GL              S         ++N Y   P+   + G+  HTDS  LTIL    N+ GLE+    +    ++ V+P+ G+L V +GD++ + SNG+  +  HR    ++  RVS
Sbjct:   30 PDSHVWSKPEPETTSGPIPVISLSN-PEEHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQG-NIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVS 298          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 63/232 (27.16%), Postives = 118/232 (50.86%), Query Frame = 2
Query:   92 LKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGY-MAPTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGL----MDSVFQDWPCQ---FRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            L ++ +A E WG F +VNH +S  LM +++++ +E     +E  +R  +++A  G     T+ N        +       V++     D     ++ ++++A  +++LA ++   L E++GL    +  VF          +++ Y   P+     G++ HTD+G L +L  D+ V GL V+ + G +V V P+  ++ +NLGD   V +NG+  +V HRV  +E   R+SI
Sbjct:   22 LNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCME--QRFKEMVASKGLDSVETEINDTDWESTFF--LRHLPVSNMSEIGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVL-KDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSI 248          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 75/254 (29.53%), Postives = 116/254 (45.67%), Query Frame = 2
Query:   56 IPTIDLGEFPKQ---LKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKR---RNTDVIAGSGYMAPTQKNPLYEALG-------LYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGLMDSVFQ------DWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVS 760
            IPTIDL + P Q   ++ + EAS EWG F+V NH + S L+ +++ V +E  +LP E K    R  D     GY    QK    E  G       L+      +  ++       P  R   E+YA+ ++E+   L   L+  +G+   V +      D     +IN Y   P    + GV  HTD   LT+L  +E V GL+V  +   ++    +P  L +++GD   + SNG+   V HR    +   R+S
Sbjct:   43 IPTIDLDD-PVQDRLVRSIAEASREWGIFQVTNHGIPSDLICKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQK----EVEGKKSWVDHLFHRVWPPSSINYRFWPKNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVF-KDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMS 289          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 75/228 (32.89%), Postives = 104/228 (45.61%), Query Frame = 2
Query:  125 GCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAG-SGYMAP-----TQKNPLYEAL--GLYDMASSQAVADFCSHL---DASPHQRETIEKYAQAIQELAVDLAHKLAESMGL----MDSVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            G F+V  H V + L         +   LPL  KRR   V    SGY +        K P  E L  G +D A++  VAD+ S     D +P  R   +KY + ++EL++ +   L  S+G+        F D     R N Y   PE   + G   H D   LTIL  D+ VGGLEV+   G + PV P+PG + +N+GD     SNGR  +  HR    +   R S+
Sbjct:   94 GFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVD-GEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSL 318          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 75/228 (32.89%), Postives = 104/228 (45.61%), Query Frame = 2
Query:  125 GCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAG-SGYMAP-----TQKNPLYEAL--GLYDMASSQAVADFCSHL---DASPHQRETIEKYAQAIQELAVDLAHKLAESMGL----MDSVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            G F+V  H V + L         +   LPL  KRR   V    SGY +        K P  E L  G +D A++  VAD+ S     D +P  R   +KY + ++EL++ +   L  S+G+        F D     R N Y   PE   + G   H D   LTIL  D+ VGGLEV+   G + PV P+PG + +N+GD     SNGR  +  HR    +   R S+
Sbjct:   94 GFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVD-GEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSL 318          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 59/232 (25.43%), Postives = 118/232 (50.86%), Query Frame = 2
Query:   92 LKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGYMA-PTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGLMDSVFQDW-------PCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            ++K+++A E WG F +VNH +S  LM  ++++ +E  +  +E  +R  +++A  G  A  ++ N L      +       V++     D     R+ ++++A+ +++LA  L   L E++GL     +             +++ Y   P      G++ HTD+G + +L  D  V GL+++ + G ++ V P+  ++ +N+GD   V +NG+  +V HRV  +    R+SI
Sbjct:   21 MEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCME--QRFKEMVATKGLEAVQSEINDLDWESTFF--LRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLL-KDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSI 247          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 70/261 (26.82%), Postives = 126/261 (48.28%), Query Frame = 2
Query:   59 PTIDLG-----EFPKQLKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGYMAPTQKNPLYEALGLYDMASSQAVAD-----FCSHL---------DASPHQRETIEKYAQAIQELAVDLAHKLAESMGL----MDSVFQDWPCQ---FRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            P +DL      E    L+K+ +A E WG F +VNH +S+ L+  ++++ ++     +E  +R  +++A               A GL D+ S     D     F  HL         D     R+T++++A  +++LA  L   L E++GL    +  VF          +++ Y   P+     G++ H+D+G + +L  D+ V GL+++ + G +V V P+  ++ +NLGD   V +NG+  +V HRV  +    R+SI
Sbjct:    5 PVVDLSLVNGEERAATLEKINDACENWGFFELVNHGMSTELLDTVEKMTKDHYKKTME--QRFKEMVA---------------AKGLDDVQSEIHDLDWESTFFLRHLPSSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLL-KDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSI 247          
BLAST of DR403413 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 62/232 (26.72%), Postives = 118/232 (50.86%), Query Frame = 2
Query:   92 LKKLREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGSGYM-APTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELAVDLAHKLAESMGLMDSVFQDW-------PCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRAGAFVPVDPLPGTLPVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSI 763
            L ++++A   WG F+VVNH +S  LM +++++ +E      E K +  D++   G + A +Q N +      Y     +  ++     D     R+ ++++A  I+ L+  L   L E++GL  +  ++            +++ Y   P+     G++ HTD+G + +L  D+ V GL+++ + G +V V P+  ++ VNLGD   V +NG+  +V HRV  +    R+SI
Sbjct:   27 LDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFK--DMVQTKGLVSAESQVNDIDWESTFY--LRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSI 253          
The following BLAST results are available for this feature:
BLAST of DR403413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ACCH1_ARATH2.041e-1626.271-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO1_BRAJU4.548e-1625.591-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
G3OX3_ARATH1.323e-1528.04Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO3_CUCME1.728e-1527.161-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
FLS_CITUN2.257e-1529.53Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
GAOX2_ORYSJ2.948e-1532.89Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.948e-1532.89Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCO_ACTDE2.948e-1525.431-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO1_MALDO2.948e-1526.821-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO_DIACA3.850e-1526.72Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244P03 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244P03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403413 ID=DR403413; Name=DR403413; organism=Citrus sinensis; type=EST; length=763bp
GGGGACGTATTCACCAGATAAACAAATAAAAAGTGAGATGGAGGAGAGGA
GAAGGATCCCGACGATAGATCTGGGGGAATTCCCGAAGCAGCTGAAGAAA
CTGAGAGAAGCAAGCGAGGAATGGGGATGCTTCAGGGTGGTGAACCACAA
GGTCTCGTCAACGCTGATGGCGGAAATGAAGCAAGTGGTGAGGGAGCTTT
TGGATCTTCCTCTCGAGATCAAACGACGCAACACCGATGTGATCGCCGGC
AGCGGCTACATGGCTCCCACCCAGAAGAATCCTCTGTATGAAGCTTTGGG
TCTCTACGACATGGCTTCTTCTCAAGCTGTTGCTGACTTTTGTTCTCACC
TGGATGCCTCTCCTCATCAGAGAGAGACAATAGAGAAATATGCTCAAGCA
ATACAAGAGTTGGCCGTGGATTTGGCGCATAAATTGGCCGAGAGTATGGG
GTTGATGGACAGTGTGTTCCAGGATTGGCCTTGCCAGTTTAGGATAAACA
AGTACAACTTCGCTCCAGAAAGCGTAGGCTCCCCTGGAGTGCAATTACAC
ACAGATTCAGGGTTCCTTACTATTCTTCAAGATGATGAAAATGTTGGTGG
CCTCGAAGTGATGGACAGAGCTGGTGCATTTGTACCTGTTGATCCCTTGC
CCGGCACCCTCCCTGTCAATCTTGGAGACATTGCCACGGTATGGAGTAAC
GGAAGGTTGCTCAATGTGAAGCATAGAGTGCAGTGCAAGGAATCAGCAAT
AAGAGTATCGATT
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