DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.191e-34
Identity = 71/172 (41.28%), Postives = 120/172 (69.77%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V + S I+++L+KP  SVAL++  + +++VLP + D  +  +   EKP+VTY++IGG + Q +E+RE VELPL   E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.555e-34
Identity = 71/172 (41.28%), Postives = 121/172 (70.35%), Query Frame = 2
Query:  230 QLEFIDIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ + + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++G N  V I S I+++L+KP  SVAL++  + +++VLP + D  +  +   E+P+VTY++IGG + Q +E+RE VELPL + E++++IG++PP+GVLLYGPPGTGKTMLAKA
Sbjct:   16 EVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 76/196 (38.78%), Postives = 123/196 (62.76%), Query Frame = 2
Query:  152 PPTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P    + TE   D    L SR   L+ Q   I+ ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +  IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E  +V Y+ IGG D Q QE++EAVELPLT  E + +IGI+PP+GVLLYG PGTGKT+LAKA
Sbjct:   17 PGELGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKA 212          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.910e-34
Identity = 78/221 (35.29%), Postives = 133/221 (60.18%), Query Frame = 2
Query:  125 DPKPVSEPPPPTRSDLTEQWSDEDDL--------YSRLKSLQRQLE----FIDIQEEYVKDEQKNLKRELLRAQEE-----VKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D      PPPPT+    ++    +          +S+ K  Q +LE    ++ +++E++++   N  +    ++E+     ++ ++  PL +G   E++D N+ IV ST G  +YVRI+S +++  L   A+V L+  + ++V V+  E D  ++++   + P  +Y+DIGG + Q QE++EA+ELPLTH ELY++IGI PP+GV+LYG PGTGKT+LAKA
Sbjct:   17 DQPKYQPPPPPTQFGKKKKRRGAETSTKLPVITPHSKCKLKQLKLERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKA 237          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34
Identity = 69/177 (38.98%), Postives = 115/177 (64.97%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +R+  L+ ++  ++++++ ++ E   L +E    + E+ R++  PL++G  ++ V +   +V S+TG ++ V +   +N + L P   V L++ +  +VDVLP   D     +   E+P+V Y DIGG + Q QEIRE VELPL H EL++++GI+PP+G+LLYGPPGTGKT+LAKA
Sbjct:   47 ARIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 223          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.831e-33
Identity = 75/196 (38.27%), Postives = 122/196 (62.24%), Query Frame = 2
Query:  152 PPTRSDLTEQWSDE-DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            P    + TE   D    L SR   L+ Q   I+ ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +  IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +   E  +V Y+ IGG D Q QE++EAVELPL   E + +IGI+PP+GVLLYG PGTGKT+LAKA
Sbjct:   17 PGELGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKA 212          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 66/177 (37.29%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKA
Sbjct:   25 TQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSMR_SULIM1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.191e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULSO1.555e-3441.28Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METMA5.910e-3438.78Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_DICDI5.910e-3435.2926S protease regulatory subunit 4 homolog OS=Dicty... [more]
PSMR_METJA7.719e-3438.98Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METAC3.831e-3338.27Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMP8.535e-3337.29Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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