DR403392

Overview
NameDR403392
Unique NameDR403392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 67/177 (37.85%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++  L+ ++  ++++ + V  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKA
Sbjct:   25 TQIAELESKVLRLELKNKDVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 66/177 (37.29%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKA
Sbjct:   25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 67/179 (37.43%), Postives = 116/179 (64.80%), Query Frame = 2
Query:  200 LYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            L  R   L+ +   I+++++ V++++   +RE+ +   E+ R+++ PL++G  ++++     I+ S+TG  + V     IN + + P A VAL++ S A+++VLP   D S+  +   + P++ Y  IGG + Q  E++E VELPL   EL++++GI+PP+GVLLYGPPGTGKT+LAKA
Sbjct:   34 LEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKA 212          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 65/177 (36.72%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  206 SRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   ++ + + P A V L++ + A+V+VLP E D     +   EKPD+++ DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKA
Sbjct:   25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 75/182 (41.21%), Postives = 114/182 (62.64%), Query Frame = 2
Query:  203 YSRLKSLQRQLEFID----IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            Y +LK L   L   D    + E     E  N ++ +      V++++  PL +G   E VD ++GI+ +  G  YYV I+S ++++LL+P  +V L+   N++V VL  E D  ++++   + P  TY DIGG + Q QEI+E+VELPLT+ ELY+++GI PP+GV+LYG PGTGKT+LAKA
Sbjct:   47 YLKLKKLAHLLSLEDNILSLCEPDKSSEGSNSQKHV------VEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKA 222          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  185 SDEDDLYSRLKSLQRQLEFIDIQEEYVKD---EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            SDE D Y R K        + + EE ++    E + L+++L   + E++++ + P +    ++++     IV S++G N  V + S I+ + LKP + VAL +  + +V+VLP   D+ +      EKP+V Y+DIGG + Q  EIRE +ELPL + EL+K+IGIDPP+GVLLYGPPGTGKT+LAKA
Sbjct:    2 SDELDSY-RAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKA 187          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 66/175 (37.71%), Postives = 114/175 (65.14%), Query Frame = 2
Query:  212 LKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            L  L+ ++  ++++ + +  E   +K+E    + E+ +++  PL++G  ++ V++   +V S+TG N+ V +   +  + + P A V L++ + A+V+VLP E D     +   EKPD+ + DIGG + Q ++I+E VELPL + EL++++GI PP+GVLLYGPPGTGKT+LAKA
Sbjct:   27 LAELESKVLRLELKNKDITRENVQIKKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKA 201          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 67/171 (39.18%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  245 DIQEEYVKDEQKNLKRELLRAQEEVK-------RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            D++   +KD+ ++L +E +  Q+E++       ++ S P +    +E++D N  +V S+TG N  V + + ++   LKP A VAL+   + +VDVLP   D  +  +   E+P V + D+GG + Q +EI EAV LP+ +  L++++GIDPP+GVLL+GPPGTGKT+LAKA
Sbjct:   22 DVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKA 192          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30
Identity = 71/229 (31.00%), Postives = 125/229 (54.59%), Query Frame = 2
Query:  137 VSEPPPPTRSDLTEQWSDEDDLYSR-LKSLQRQLEFIDIQEEYVKDEQK-------NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +S PPP   + +    +D+D L S   + + R    +D +   +KDE +       + K ++   QE++K  + +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ E LKP   V +++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH + ++++GI PP+GVLLYGPPGTGKT++A+A
Sbjct:    1 MSSPPPAAAAAMAVDDADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARA 229          
BLAST of DR403392 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 60/178 (33.71%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  209 RLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS--LLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKA 736
            +++ L  +   +  +   +K +       +    E ++  + +P ++G  +E++D+++G+V ++T  + Y+ I   I    L+P   VALH+ +N + + LPP+ D  +   +L    KPD TY DIGG + Q +E+ EA+ L LTH E ++++ I PP+GVL+YGPPGTGKT++A+A
Sbjct:   24 KIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARA 201          
The following BLAST results are available for this feature:
BLAST of DR403392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
PSMR_METM78.535e-3337.85Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM68.535e-3337.29Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_UNCMA1.901e-3237.43Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METM51.901e-3236.72Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_ENCCU1.901e-3241.2126S protease regulatory subunit 4 homolog OS=Encep... [more]
PSMR_SULTO5.532e-3241.18Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METVS7.225e-3237.71Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_AERPE2.102e-3139.18Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6A_ORYSJ6.762e-3031.0026S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_ENCCU1.968e-2933.7126S protease regulatory subunit 6A OS=Encephalitoz... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244N18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244N18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403392 ID=DR403392; Name=DR403392; organism=Citrus sinensis; type=EST; length=738bp
GGGGTCCTTTATTAAGAAAAAAAAATTTTGACAATCATCAATCGACCAAT
CCTTCGTTATAATTTCTTGCTGGTCACTCCAAATTCCTCTCAACAAAACA
ATGGCAGCCTCAGCGATGGTTCTAGACCCGAAGCCAGTATCGGAGCCACC
ACCGCCAACAAGATCCGATCTGACGGAGCAATGGTCGGACGAAGACGACC
TCTACAGCCGACTTAAATCCCTGCAACGGCAGCTCGAGTTCATCGACATC
CAAGAAGAGTACGTCAAAGACGAGCAAAAGAACTTGAAGCGTGAACTGCT
ACGCGCCCAGGAGGAGGTGAAGCGGATCCAATCGGTGCCGTTGGTAATCG
GACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCACC
ACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAGTT
GTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCTTG
TTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCCAG
TCCGAGAAGCCTGACGTTACTTATAATGATATTGGAGGATGTGATATTCA
AAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGAGC
TATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATGGT
CCTCCTGGAACTGGTAAAACTATGCTTGCAAAGGCTGT
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