DR403374

Overview
NameDR403374
Unique NameDR403374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:65..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.965e-32
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   16 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            ++K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+    G+
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69          

HSP 2 Score: 71.633 bits (174), Expect = 3.965e-32
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKL--LSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDS 631
            FS+RG+LYE  +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +   L   N+ L+ ++ E  +   + L P +    Y L P Q   D+
Sbjct:   64 FSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPGSS--SYDLVPPQQSFDA 216          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.484e-31
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   16 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            ++K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+    G+
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 69          

HSP 2 Score: 69.707 bits (169), Expect = 1.484e-31
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKL--LSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDS 631
            FS+RG+LYE  +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +   L   N+ L+ ++ E      Q    Q+N       Y L P   Q D+
Sbjct:   64 FSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDT 222          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.484e-31
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query:   16 EKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            ++K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++    G+
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGR 69          

HSP 2 Score: 70.0922 bits (170), Expect = 1.484e-31
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKL--LSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDS 631
            FSNRG+LYE  +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +   L   N+ L+ ++ E     +Q   + L P +    + L P   Q D+
Sbjct:   64 FSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.278e-31
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   19 KKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            KK+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+I    G+
Sbjct:   14 KKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGR 68          

HSP 2 Score: 68.9366 bits (167), Expect = 3.278e-31
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKLLSEANKTLKQR 535
            FS RG+LYE  +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q + +   N  +  R
Sbjct:   63 FSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLR 183          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.602e-30
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+    G+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGR 53          

HSP 2 Score: 67.0106 bits (162), Expect = 4.602e-30
Identity = 43/144 (29.86%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKLLSEANKTLKQRL----MEGYQVNTLQLNPSAE 586
            FS RG+LYE  +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q + +   N+ +  R     +E YQ +  Q+   +E
Sbjct:   48 FSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSE 189          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.012e-29
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 GEERKEKKMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            G    EK   RG++E+KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++    G+
Sbjct:   35 GSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGR 95          

HSP 2 Score: 70.4774 bits (171), Expect = 1.012e-29
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK--LLSEANKTLKQRLMEGYQ-VNTLQLNPSAEDCGY 598
            FS+RG+LYE  S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +   L   N  LK ++ E  + + T+ +  SA    Y
Sbjct:   90 FSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEY 234          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.910e-29
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            MGRGR+E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+    G+
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 53          

HSP 2 Score: 65.0846 bits (157), Expect = 2.910e-29
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQKCNY-----GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPA 613
            FS+RG+LYE  +++++  T++RY+K +      GAP   V+A++      QQE  KL+ + + LQ + ++L+G+ +  L+ KEL+ LE +L+  + +IR+ + + +   +  +  + +   N  +  R     +   LQ    A      L+ A
Sbjct:   48 FSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYY----QQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAA 197          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.401e-29
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALII    GK
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGK 53          

HSP 2 Score: 69.3218 bits (168), Expect = 8.401e-29
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  167 FSNRGKLYEXCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYM---LDTLTELQHKLLSEANKTLKQRLMEG 547
            FS RGKLYE  SSSS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q +    + L E +  L++E    +++  M+G
Sbjct:   48 FSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQG 175          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.409e-28
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIILLQ*GK 183
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LII    GK
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGK 53          

HSP 2 Score: 66.2402 bits (160), Expect = 2.409e-28
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  167 FSNRGKLYEXCS-SSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK--LLSEANKTLKQRLME 544
            FS+ GKL+E  S SSSM K +ERYQK         VS     E  +Q  Y    ++K   E LQ + R ++GE+L  L   EL  L +QL+ +  ++RS + Q ML  L  L+ K  +L + N  L + L E
Sbjct:   48 FSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE 170          
BLAST of DR403374 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.926e-28
Identity = 63/198 (31.82%), Postives = 94/198 (47.47%), Query Frame = 2
Query:  167 FSNRGKLYEXCSS-SSMVKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTA---GPSLNNYMQGWL 745
            FS +G L+   SS ++M + LE+Y +    +   NV      LE S   +++KL+ R EAL++SQRNL+G+EL  L  ++++ LE Q+D SL  IRS +             KLL E N  L++++ E   + TL     A        PA    D+F       P L I    +     VTA     S NN +  W+
Sbjct:   48 FSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRK------------EKLLMEKNTILEKKITE---LETLHTCIRASPTKAAAPPACNTADAFV------PNLNICCGDSGEPETVTAPLGWTSSNNGLPWWM 224          

HSP 2 Score: 71.633 bits (174), Expect = 6.926e-28
Identity = 31/47 (65.96%), Postives = 44/47 (93.62%), Query Frame = 1
Query:   25 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALII 165
            MGRG+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIV 47          
The following BLAST results are available for this feature:
BLAST of DR403374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AG_PETHY3.965e-3273.21Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC1.484e-3173.21Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC1.484e-3171.43Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL5_ARATH3.278e-3176.36Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL11_ARATH4.602e-3077.36Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD58_ORYSJ1.012e-2965.57MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD13_ORYSJ2.910e-2977.36MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL14_ARATH8.401e-2975.47Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
GGM13_GNEGN2.409e-2873.58MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD20_ORYSJ6.926e-2831.82MADS-box transcription factor 20 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403374 ID=DR403374; Name=DR403374; organism=Citrus sinensis; type=EST; length=751bp
GGGGAAGAAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGCTGAA
GAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAA
ACGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAG
GTTGCTCTCATCATTCTTCTCCAATAGGGGAAAGCTGTACGAGTNNTGCA
GTAGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTAT
GGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAG
CCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGAT
CCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAG
CTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATC
AACAAGAACTCAGTACATGCTGGACACCCTTACTGAACTGCAACATAAGT
TGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATAC
CAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGG
GCTTAAACCAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGAAT
GTGAACCCACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTT
GTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATGGCTACCATG
C
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